Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3339-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3339-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1640277 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 8190121 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 27495381 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30639533 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 33429354 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 25959287 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 25981896 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 11141849 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26247836 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2713541 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 12147883 | A-G | Homo | INTRON | |
| SBS | Chr4 | 13458593 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21570200 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 32149994 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 9539417 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 16972718 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 3781192 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 9881055 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 17559318 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 5856282 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18833688 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17811020 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 6609795 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14795907 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13142691 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13373218 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7851873 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9037534 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13254004 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 26419018 | G-C | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 56230 | 56232 | 2 | |
| Deletion | Chr1 | 2307001 | 2398000 | 90999 | 14 |
| Deletion | Chr11 | 7234740 | 7234750 | 10 | |
| Deletion | Chr11 | 8039001 | 8078000 | 38999 | 7 |
| Deletion | Chr11 | 11588480 | 11588482 | 2 | |
| Deletion | Chr11 | 13817748 | 13817750 | 2 | |
| Deletion | Chr10 | 14501317 | 14501318 | 1 | |
| Deletion | Chr12 | 15367001 | 15376000 | 8999 | |
| Deletion | Chr12 | 16344001 | 16452000 | 107999 | 5 |
| Deletion | Chr8 | 18091001 | 18112000 | 20999 | OsKitaake08g134500 |
| Deletion | Chr1 | 32956457 | 32956465 | 8 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 20579647 | 20579650 | 2 | |
| Insertion | Chr11 | 20130817 | 20130820 | 2 | |
| Insertion | Chr2 | 19257882 | 19257885 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 10564953 | 11206394 | OsKitaake12g098650 |
| Inversion | Chr12 | 10565978 | 11413169 | OsKitaake12g098650 |
| Inversion | Chr8 | 17105071 | 17475132 | |
| Inversion | Chr8 | 17105078 | 17475145 | |
| Inversion | Chr6 | 17579445 | 18242089 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 1531508 | Chr5 | 22896994 | |
| Translocation | Chr7 | 1531511 | Chr5 | 22897442 | |
| Translocation | Chr11 | 3781604 | Chr4 | 17358959 | 2 |
| Translocation | Chr11 | 3781617 | Chr4 | 17360751 | OsKitaake11g052500 |
| Translocation | Chr12 | 11206459 | Chr11 | 1398905 | |
| Translocation | Chr12 | 11412580 | Chr11 | 1398884 |