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| Mutant Information |
|---|
| Mutant Name | FN3341-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3341-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13898883 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 19400743 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 37856060 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 599274 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g009000 |
| SBS | Chr2 | 1297211 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 5521100 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17162618 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 23071668 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1606536 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 4243139 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 17217618 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 21634238 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4039100 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g048700 |
| SBS | Chr5 | 11042254 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 15691988 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 25120331 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 16183681 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8350921 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 29510164 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g284300 |
| SBS | Chr8 | 29307408 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 19168507 | T-C | Hetero | STOP_LOST | OsKitaake09g154000 |
| SBS | Chr10 | 23477514 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 21323009 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 28620989 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g234500 |
| SBS | Chr11 | 28620992 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g234500 |
| SBS | Chr12 | 25298110 | C-T | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2889127 | 2889128 | 1 | |
| Deletion | Chr8 | 9693759 | 9693760 | 1 | |
| Deletion | Chr7 | 10658370 | 10658375 | 5 | OsKitaake07g101800 |
| Deletion | Chr8 | 12747914 | 12747915 | 1 | |
| Deletion | Chr8 | 13619126 | 13619152 | 26 | |
| Deletion | Chr7 | 17483702 | 17483704 | 2 | |
| Deletion | Chr6 | 17787580 | 17787582 | 2 | |
| Deletion | Chr5 | 19261001 | 19324000 | 62999 | 6 |
| Deletion | Chr2 | 24817001 | 24853000 | 35999 | 7 |
| Deletion | Chr2 | 26986232 | 26986238 | 6 | |
| Deletion | Chr2 | 28449221 | 28449226 | 5 | |
| Deletion | Chr3 | 29711027 | 29711029 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 12147613 | 12147616 | 2 | |
| Insertion | Chr6 | 60645 | 60647 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 19904557 | 20642555 | |
| Inversion | Chr9 | 19904561 | 20642560 | |
| Inversion | Chr2 | 24088509 | 24179485 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 1522563 | Chr2 | 24817362 |