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Mutant Information

Mutant Name	FN3342-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3342-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4449851 A-T Homo INTERGENIC
SBS Chr1 40685856 C-T Hetero INTERGENIC
SBS Chr1 43196085 A-T Hetero INTERGENIC
SBS Chr2 18503737 C-T Homo INTERGENIC
SBS Chr3 3909259 C-T Hetero INTERGENIC
SBS Chr3 18717141 T-A Hetero INTERGENIC
SBS Chr3 22229619 G-A Hetero INTERGENIC
SBS Chr3 23748469 G-A Hetero INTERGENIC
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr3 32436676 G-A Hetero INTERGENIC
SBS Chr4 1201198 T-A Hetero INTRON
SBS Chr4 3669576 T-C Hetero INTRON
SBS Chr4 14790941 G-A Hetero INTERGENIC
SBS Chr4 14822254 G-A Hetero INTERGENIC
SBS Chr4 16635247 C-T Hetero INTERGENIC
SBS Chr4 21736300 G-T Homo INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr5 3576802 T-G Homo INTERGENIC
SBS Chr5 11066536 A-G Hetero INTERGENIC
SBS Chr5 12913045 T-C Hetero INTERGENIC
SBS Chr5 13785526 C-G Hetero INTERGENIC
SBS Chr5 16491840 T-A Hetero INTERGENIC
SBS Chr5 22325466 C-T Hetero INTERGENIC
SBS Chr6 11251049 C-T Hetero INTERGENIC
SBS Chr6 12592154 C-A Hetero INTERGENIC
SBS Chr7 9684102 C-T Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 26229232 T-A Hetero INTRON
SBS Chr8 19265282 G-A Hetero INTERGENIC
SBS Chr8 29170785 T-C Hetero INTRON
SBS Chr8 29238048 T-C Hetero INTERGENIC
SBS Chr9 5014101 C-T Homo INTERGENIC
SBS Chr9 5205494 G-A Homo INTERGENIC
SBS Chr10 2100089 T-C Homo INTERGENIC
SBS Chr10 6370694 G-C Hetero INTERGENIC
SBS Chr10 7729388 C-T Homo INTERGENIC
SBS Chr11 4991922 C-T Hetero INTERGENIC
SBS Chr11 8905994 A-C Hetero INTERGENIC
SBS Chr11 9308887 G-T Hetero INTRON
SBS Chr11 9308888 C-T Hetero INTRON
SBS Chr11 10792877 G-C Hetero INTERGENIC
SBS Chr11 13568671 G-T Hetero INTERGENIC
SBS Chr11 16256811 G-C Hetero INTERGENIC
SBS Chr11 16703921 C-T Hetero INTERGENIC
SBS Chr12 12075539 T-C Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 610521 610522 1
Deletion Chr8 1903921 1903924 3
Deletion Chr6 4768001 4796000 27999 4
Deletion Chr12 10589374 10589385 11
Deletion Chr2 12426128 12426129 1
Deletion Chr8 15776410 15776412 2
Deletion Chr1 16351651 16351657 6
Deletion Chr12 19464421 19464432 11
Deletion Chr9 20847574 20847575 1
Deletion Chr7 24631001 24659000 27999 3
Deletion Chr2 25209367 25209369 2
Deletion Chr6 26328573 26328574 1
Deletion Chr11 27482550 27482553 3 OsKitaake11g223900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr5 821856 821859 2
Insertion Chr5 5468392 5468395 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 585518 1507913 OsKitaake02g023800
Inversion Chr1 832924 1249039
Inversion Chr11 8686726 8919398
Inversion Chr11 8715456 8921905
Inversion Chr2 27743478 27935060
Inversion Chr2 28994701 29141328

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 9277167 Chr7 24634877 OsKitaake07g219400
Translocation Chr8 9277168 Chr7 24636716 OsKitaake07g219400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4449851	A-T	Homo	INTERGENIC
SBS	Chr1	40685856	C-T	Hetero	INTERGENIC
SBS	Chr1	43196085	A-T	Hetero	INTERGENIC
SBS	Chr2	18503737	C-T	Homo	INTERGENIC
SBS	Chr3	3909259	C-T	Hetero	INTERGENIC
SBS	Chr3	18717141	T-A	Hetero	INTERGENIC
SBS	Chr3	22229619	G-A	Hetero	INTERGENIC
SBS	Chr3	23748469	G-A	Hetero	INTERGENIC
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr3	32436676	G-A	Hetero	INTERGENIC
SBS	Chr4	1201198	T-A	Hetero	INTRON
SBS	Chr4	3669576	T-C	Hetero	INTRON
SBS	Chr4	14790941	G-A	Hetero	INTERGENIC
SBS	Chr4	14822254	G-A	Hetero	INTERGENIC
SBS	Chr4	16635247	C-T	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr5	3576802	T-G	Homo	INTERGENIC
SBS	Chr5	11066536	A-G	Hetero	INTERGENIC
SBS	Chr5	12913045	T-C	Hetero	INTERGENIC
SBS	Chr5	13785526	C-G	Hetero	INTERGENIC
SBS	Chr5	16491840	T-A	Hetero	INTERGENIC
SBS	Chr5	22325466	C-T	Hetero	INTERGENIC
SBS	Chr6	11251049	C-T	Hetero	INTERGENIC
SBS	Chr6	12592154	C-A	Hetero	INTERGENIC
SBS	Chr7	9684102	C-T	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	26229232	T-A	Hetero	INTRON
SBS	Chr8	19265282	G-A	Hetero	INTERGENIC
SBS	Chr8	29170785	T-C	Hetero	INTRON
SBS	Chr8	29238048	T-C	Hetero	INTERGENIC
SBS	Chr9	5014101	C-T	Homo	INTERGENIC
SBS	Chr9	5205494	G-A	Homo	INTERGENIC
SBS	Chr10	2100089	T-C	Homo	INTERGENIC
SBS	Chr10	6370694	G-C	Hetero	INTERGENIC
SBS	Chr10	7729388	C-T	Homo	INTERGENIC
SBS	Chr11	4991922	C-T	Hetero	INTERGENIC
SBS	Chr11	8905994	A-C	Hetero	INTERGENIC
SBS	Chr11	9308887	G-T	Hetero	INTRON
SBS	Chr11	9308888	C-T	Hetero	INTRON
SBS	Chr11	10792877	G-C	Hetero	INTERGENIC
SBS	Chr11	13568671	G-T	Hetero	INTERGENIC
SBS	Chr11	16256811	G-C	Hetero	INTERGENIC
SBS	Chr11	16703921	C-T	Hetero	INTERGENIC
SBS	Chr12	12075539	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	610521	610522	1
Deletion	Chr8	1903921	1903924	3
Deletion	Chr6	4768001	4796000	27999	4
Deletion	Chr12	10589374	10589385	11
Deletion	Chr2	12426128	12426129	1
Deletion	Chr8	15776410	15776412	2
Deletion	Chr1	16351651	16351657	6
Deletion	Chr12	19464421	19464432	11
Deletion	Chr9	20847574	20847575	1
Deletion	Chr7	24631001	24659000	27999	3
Deletion	Chr2	25209367	25209369	2
Deletion	Chr6	26328573	26328574	1
Deletion	Chr11	27482550	27482553	3	OsKitaake11g223900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	585518	1507913	OsKitaake02g023800
Inversion	Chr1	832924	1249039
Inversion	Chr11	8686726	8919398
Inversion	Chr11	8715456	8921905
Inversion	Chr2	27743478	27935060
Inversion	Chr2	28994701	29141328

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes