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Mutant Information

Mutant Name	FN3343-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3343-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 72

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10379438 C-A Hetero INTERGENIC
SBS Chr1 10806812 T-C Hetero INTERGENIC
SBS Chr1 13780531 G-A Hetero INTERGENIC
SBS Chr1 18158563 G-A Hetero INTERGENIC
SBS Chr1 18158564 G-A Hetero INTERGENIC
SBS Chr1 19035347 G-A Hetero INTERGENIC
SBS Chr1 28763743 A-G Hetero UTR_3_PRIME
SBS Chr1 30760152 G-T Hetero UTR_3_PRIME
SBS Chr1 37807526 G-A Homo INTERGENIC
SBS Chr2 13495598 T-A Hetero INTERGENIC
SBS Chr2 14020235 G-C Homo INTERGENIC
SBS Chr2 17786303 A-G Homo INTERGENIC
SBS Chr2 23152190 T-C Hetero INTERGENIC
SBS Chr2 34581512 T-C Homo INTERGENIC
SBS Chr2 35788732 A-T Homo INTERGENIC
SBS Chr3 1314822 A-G Hetero INTERGENIC
SBS Chr3 7474147 C-T Hetero INTERGENIC
SBS Chr3 13716895 C-T Homo INTERGENIC
SBS Chr3 25293159 G-T Hetero INTERGENIC
SBS Chr3 26524772 G-A Hetero INTERGENIC
SBS Chr3 32856910 T-A Hetero INTERGENIC
SBS Chr3 37130880 A-G Hetero INTERGENIC
SBS Chr4 3245754 A-G Hetero INTERGENIC
SBS Chr4 14362304 C-A Hetero INTERGENIC
SBS Chr4 25471610 T-C Hetero INTERGENIC
SBS Chr4 31072596 C-T Hetero INTERGENIC
SBS Chr5 7692027 T-C Hetero INTERGENIC
SBS Chr5 12421304 T-A Homo INTERGENIC
SBS Chr5 28642579 C-T Homo INTRON
SBS Chr6 11202999 A-G Hetero INTERGENIC
SBS Chr6 11768363 C-T Hetero INTRON
SBS Chr6 14536183 G-T Hetero INTERGENIC
SBS Chr6 18463857 G-A Hetero INTERGENIC
SBS Chr6 24562131 C-T Homo INTERGENIC
SBS Chr7 2691556 C-T Hetero INTERGENIC
SBS Chr7 16054143 T-C Hetero INTERGENIC
SBS Chr7 17094298 T-C Hetero INTERGENIC
SBS Chr7 18033845 C-T Hetero INTERGENIC
SBS Chr7 28645722 C-T Hetero INTERGENIC
SBS Chr8 1514636 C-G Hetero INTERGENIC
SBS Chr8 1796473 G-A Homo INTERGENIC
SBS Chr8 2688992 A-G Hetero INTERGENIC
SBS Chr8 3931769 C-T Homo INTERGENIC
SBS Chr8 11076524 C-T Hetero INTERGENIC
SBS Chr8 29228853 C-T Hetero INTRON
SBS Chr9 1638819 C-T Homo INTERGENIC
SBS Chr9 3342351 C-T Hetero INTERGENIC
SBS Chr9 4286298 T-A Hetero INTERGENIC
SBS Chr9 5632920 C-G Hetero INTERGENIC
SBS Chr9 6697458 A-G Homo INTERGENIC
SBS Chr9 7803271 T-A Homo INTERGENIC
SBS Chr9 8409269 A-G Homo INTERGENIC
SBS Chr10 1815067 G-A Hetero INTRON
SBS Chr10 10012210 T-C Hetero INTERGENIC
SBS Chr10 10424544 T-A Hetero INTERGENIC
SBS Chr10 17530192 T-A Homo INTERGENIC
SBS Chr11 730311 G-T Hetero UTR_3_PRIME
SBS Chr11 5039458 G-A Hetero INTERGENIC
SBS Chr11 16442870 T-A Hetero INTERGENIC
SBS Chr11 20692900 C-T Hetero INTERGENIC
SBS Chr11 21428298 A-G Homo UTR_3_PRIME
SBS Chr11 25156668 G-T Hetero INTERGENIC
SBS Chr11 26575225 G-A Hetero INTERGENIC
SBS Chr11 26668188 G-A Hetero INTERGENIC
SBS Chr11 27740252 G-A Hetero INTERGENIC
SBS Chr11 29206443 T-A Hetero INTERGENIC
SBS Chr12 969470 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g014100
SBS Chr12 8032663 T-C Hetero INTERGENIC
SBS Chr12 8543946 T-A Hetero INTERGENIC
SBS Chr12 9533720 G-A Hetero INTERGENIC
SBS Chr12 15384944 C-T Homo INTERGENIC
SBS Chr12 22551182 T-C Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4012001 4187000 174999 20
Deletion Chr11 4205001 4250000 44999 4
Deletion Chr11 7413998 7414000 2
Deletion Chr11 7452001 7505000 52999 4
Deletion Chr2 9338095 9338100 5
Deletion Chr3 10033171 10033172 1 OsKitaake03g137300
Deletion Chr11 12330524 12330535 11
Deletion Chr10 14456128 14456131 3
Deletion Chr8 16007696 16007697 1
Deletion Chr7 16610344 16610716 372 OsKitaake07g136550
Deletion Chr1 18014635 18014720 85
Deletion Chr9 21138001 21188000 49999 9
Deletion Chr11 21333209 21333219 10
Deletion Chr7 22757985 22757988 3
Deletion Chr5 27779471 27779473 2
Deletion Chr4 36408815 36408820 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22226471 22226473 1 OsKitaake01g212500
Insertion Chr5 2190840 2190849 8
Insertion Chr9 16966748 16966750 1
Insertion Chr10 19774670 19774675 4
Insertion Chr11 7823385 7823388 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 637537 1100795
Inversion Chr11 7452775 7758822
Inversion Chr11 7506322 7758978

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 12711828 Chr9 20721839
Translocation Chr10 14298603 Chr6 28336146
Translocation Chr9 20722880 Chr6 28336143

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10379438	C-A	Hetero	INTERGENIC
SBS	Chr1	10806812	T-C	Hetero	INTERGENIC
SBS	Chr1	13780531	G-A	Hetero	INTERGENIC
SBS	Chr1	18158563	G-A	Hetero	INTERGENIC
SBS	Chr1	18158564	G-A	Hetero	INTERGENIC
SBS	Chr1	19035347	G-A	Hetero	INTERGENIC
SBS	Chr1	28763743	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	30760152	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	37807526	G-A	Homo	INTERGENIC
SBS	Chr2	13495598	T-A	Hetero	INTERGENIC
SBS	Chr2	14020235	G-C	Homo	INTERGENIC
SBS	Chr2	17786303	A-G	Homo	INTERGENIC
SBS	Chr2	23152190	T-C	Hetero	INTERGENIC
SBS	Chr2	34581512	T-C	Homo	INTERGENIC
SBS	Chr2	35788732	A-T	Homo	INTERGENIC
SBS	Chr3	1314822	A-G	Hetero	INTERGENIC
SBS	Chr3	7474147	C-T	Hetero	INTERGENIC
SBS	Chr3	13716895	C-T	Homo	INTERGENIC
SBS	Chr3	25293159	G-T	Hetero	INTERGENIC
SBS	Chr3	26524772	G-A	Hetero	INTERGENIC
SBS	Chr3	32856910	T-A	Hetero	INTERGENIC
SBS	Chr3	37130880	A-G	Hetero	INTERGENIC
SBS	Chr4	3245754	A-G	Hetero	INTERGENIC
SBS	Chr4	14362304	C-A	Hetero	INTERGENIC
SBS	Chr4	25471610	T-C	Hetero	INTERGENIC
SBS	Chr4	31072596	C-T	Hetero	INTERGENIC
SBS	Chr5	7692027	T-C	Hetero	INTERGENIC
SBS	Chr5	12421304	T-A	Homo	INTERGENIC
SBS	Chr5	28642579	C-T	Homo	INTRON
SBS	Chr6	11202999	A-G	Hetero	INTERGENIC
SBS	Chr6	11768363	C-T	Hetero	INTRON
SBS	Chr6	14536183	G-T	Hetero	INTERGENIC
SBS	Chr6	18463857	G-A	Hetero	INTERGENIC
SBS	Chr6	24562131	C-T	Homo	INTERGENIC
SBS	Chr7	2691556	C-T	Hetero	INTERGENIC
SBS	Chr7	16054143	T-C	Hetero	INTERGENIC
SBS	Chr7	17094298	T-C	Hetero	INTERGENIC
SBS	Chr7	18033845	C-T	Hetero	INTERGENIC
SBS	Chr7	28645722	C-T	Hetero	INTERGENIC
SBS	Chr8	1514636	C-G	Hetero	INTERGENIC
SBS	Chr8	1796473	G-A	Homo	INTERGENIC
SBS	Chr8	2688992	A-G	Hetero	INTERGENIC
SBS	Chr8	3931769	C-T	Homo	INTERGENIC
SBS	Chr8	11076524	C-T	Hetero	INTERGENIC
SBS	Chr8	29228853	C-T	Hetero	INTRON
SBS	Chr9	1638819	C-T	Homo	INTERGENIC
SBS	Chr9	3342351	C-T	Hetero	INTERGENIC
SBS	Chr9	4286298	T-A	Hetero	INTERGENIC
SBS	Chr9	5632920	C-G	Hetero	INTERGENIC
SBS	Chr9	6697458	A-G	Homo	INTERGENIC
SBS	Chr9	7803271	T-A	Homo	INTERGENIC
SBS	Chr9	8409269	A-G	Homo	INTERGENIC
SBS	Chr10	1815067	G-A	Hetero	INTRON
SBS	Chr10	10012210	T-C	Hetero	INTERGENIC
SBS	Chr10	10424544	T-A	Hetero	INTERGENIC
SBS	Chr10	17530192	T-A	Homo	INTERGENIC
SBS	Chr11	730311	G-T	Hetero	UTR_3_PRIME
SBS	Chr11	5039458	G-A	Hetero	INTERGENIC
SBS	Chr11	16442870	T-A	Hetero	INTERGENIC
SBS	Chr11	20692900	C-T	Hetero	INTERGENIC
SBS	Chr11	21428298	A-G	Homo	UTR_3_PRIME
SBS	Chr11	25156668	G-T	Hetero	INTERGENIC
SBS	Chr11	26575225	G-A	Hetero	INTERGENIC
SBS	Chr11	26668188	G-A	Hetero	INTERGENIC
SBS	Chr11	27740252	G-A	Hetero	INTERGENIC
SBS	Chr11	29206443	T-A	Hetero	INTERGENIC
SBS	Chr12	969470	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g014100
SBS	Chr12	8032663	T-C	Hetero	INTERGENIC
SBS	Chr12	8543946	T-A	Hetero	INTERGENIC
SBS	Chr12	9533720	G-A	Hetero	INTERGENIC
SBS	Chr12	15384944	C-T	Homo	INTERGENIC
SBS	Chr12	22551182	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4012001	4187000	174999	20
Deletion	Chr11	4205001	4250000	44999	4
Deletion	Chr11	7413998	7414000	2
Deletion	Chr11	7452001	7505000	52999	4
Deletion	Chr2	9338095	9338100	5
Deletion	Chr3	10033171	10033172	1	OsKitaake03g137300
Deletion	Chr11	12330524	12330535	11
Deletion	Chr10	14456128	14456131	3
Deletion	Chr8	16007696	16007697	1
Deletion	Chr7	16610344	16610716	372	OsKitaake07g136550
Deletion	Chr1	18014635	18014720	85
Deletion	Chr9	21138001	21188000	49999	9
Deletion	Chr11	21333209	21333219	10
Deletion	Chr7	22757985	22757988	3
Deletion	Chr5	27779471	27779473	2
Deletion	Chr4	36408815	36408820	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	637537	1100795
Inversion	Chr11	7452775	7758822
Inversion	Chr11	7506322	7758978

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes