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Mutant Information

Mutant Name	FN3345-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3345-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27746232 C-T Hetero INTERGENIC
SBS Chr2 2622548 G-A Hetero INTERGENIC
SBS Chr2 25344862 C-T Hetero INTERGENIC
SBS Chr2 27852640 A-G Hetero INTERGENIC
SBS Chr2 29525880 C-T Hetero INTRON
SBS Chr2 30915577 G-A Hetero INTERGENIC
SBS Chr3 161370 G-C Homo INTERGENIC
SBS Chr3 13558838 T-C Hetero INTERGENIC
SBS Chr3 14154600 T-C Hetero INTERGENIC
SBS Chr3 22808109 G-C Hetero INTERGENIC
SBS Chr3 22862811 C-A Hetero INTRON
SBS Chr3 27309816 C-A Hetero INTERGENIC
SBS Chr3 31363117 T-C Homo INTERGENIC
SBS Chr3 31862009 A-T Homo INTERGENIC
SBS Chr3 36852079 G-A Homo INTRON
SBS Chr4 3994467 G-T Hetero INTERGENIC
SBS Chr4 8124377 G-A Hetero INTERGENIC
SBS Chr4 20559293 G-A Homo INTERGENIC
SBS Chr4 24899203 G-A Hetero INTERGENIC
SBS Chr5 5062639 A-T Homo INTERGENIC
SBS Chr5 10535237 C-A Homo INTERGENIC
SBS Chr5 10994997 T-C Hetero INTERGENIC
SBS Chr5 11739563 G-T Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 18346003 C-T Hetero INTERGENIC
SBS Chr5 21635769 A-G Hetero INTERGENIC
SBS Chr6 648253 C-T Hetero INTERGENIC
SBS Chr6 1004823 C-T Hetero INTERGENIC
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr6 11539949 G-A Hetero INTERGENIC
SBS Chr7 9290926 T-A Hetero INTERGENIC
SBS Chr7 10411063 G-A Hetero INTERGENIC
SBS Chr7 11852018 G-T Hetero INTERGENIC
SBS Chr7 12492170 C-T Hetero INTERGENIC
SBS Chr7 26493191 G-A Homo INTRON
SBS Chr7 29624952 C-T Hetero INTERGENIC
SBS Chr8 2532489 C-T Hetero INTERGENIC
SBS Chr8 7477589 A-G Hetero INTERGENIC
SBS Chr8 10939524 T-A Hetero INTRON
SBS Chr9 3986787 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Homo INTERGENIC
SBS Chr10 596779 T-C Hetero INTERGENIC
SBS Chr11 12960484 C-A Homo INTERGENIC
SBS Chr12 3360549 C-T Hetero INTERGENIC
SBS Chr12 6711649 A-T Hetero INTERGENIC
SBS Chr12 12895569 C-T Homo INTERGENIC
SBS Chr12 16276785 C-T Homo INTRON
SBS Chr12 25438456 T-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 750055 750056 1
Deletion Chr1 1223069 1223070 1
Deletion Chr4 3494690 3494691 1
Deletion Chr1 6361643 6361651 8
Deletion Chr8 7269001 7426000 156999 3
Deletion Chr9 8987247 8987257 10
Deletion Chr12 11007443 11007448 5
Deletion Chr5 11926061 11926069 8
Deletion Chr12 16024464 16024465 1
Deletion Chr6 18110848 18110856 8
Deletion Chr4 20574506 20574517 11
Deletion Chr11 23513001 23580000 66999 5
Deletion Chr7 25951878 25951881 3 OsKitaake07g237250
Deletion Chr3 31875739 31875755 16

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4499896 4499899 2
Insertion Chr3 22814123 22814126 2
Insertion Chr4 2324030 2324032 1
Insertion Chr7 7422331 7422337 5
Insertion Chr8 3379517 3379520 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 6600762 6798711
Inversion Chr8 6600881 7429111

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27746232	C-T	Hetero	INTERGENIC
SBS	Chr2	2622548	G-A	Hetero	INTERGENIC
SBS	Chr2	25344862	C-T	Hetero	INTERGENIC
SBS	Chr2	27852640	A-G	Hetero	INTERGENIC
SBS	Chr2	29525880	C-T	Hetero	INTRON
SBS	Chr2	30915577	G-A	Hetero	INTERGENIC
SBS	Chr3	161370	G-C	Homo	INTERGENIC
SBS	Chr3	13558838	T-C	Hetero	INTERGENIC
SBS	Chr3	14154600	T-C	Hetero	INTERGENIC
SBS	Chr3	22808109	G-C	Hetero	INTERGENIC
SBS	Chr3	22862811	C-A	Hetero	INTRON
SBS	Chr3	27309816	C-A	Hetero	INTERGENIC
SBS	Chr3	31363117	T-C	Homo	INTERGENIC
SBS	Chr3	31862009	A-T	Homo	INTERGENIC
SBS	Chr3	36852079	G-A	Homo	INTRON
SBS	Chr4	3994467	G-T	Hetero	INTERGENIC
SBS	Chr4	8124377	G-A	Hetero	INTERGENIC
SBS	Chr4	20559293	G-A	Homo	INTERGENIC
SBS	Chr4	24899203	G-A	Hetero	INTERGENIC
SBS	Chr5	5062639	A-T	Homo	INTERGENIC
SBS	Chr5	10535237	C-A	Homo	INTERGENIC
SBS	Chr5	10994997	T-C	Hetero	INTERGENIC
SBS	Chr5	11739563	G-T	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	18346003	C-T	Hetero	INTERGENIC
SBS	Chr5	21635769	A-G	Hetero	INTERGENIC
SBS	Chr6	648253	C-T	Hetero	INTERGENIC
SBS	Chr6	1004823	C-T	Hetero	INTERGENIC
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr6	11539949	G-A	Hetero	INTERGENIC
SBS	Chr7	9290926	T-A	Hetero	INTERGENIC
SBS	Chr7	10411063	G-A	Hetero	INTERGENIC
SBS	Chr7	11852018	G-T	Hetero	INTERGENIC
SBS	Chr7	12492170	C-T	Hetero	INTERGENIC
SBS	Chr7	26493191	G-A	Homo	INTRON
SBS	Chr7	29624952	C-T	Hetero	INTERGENIC
SBS	Chr8	2532489	C-T	Hetero	INTERGENIC
SBS	Chr8	7477589	A-G	Hetero	INTERGENIC
SBS	Chr8	10939524	T-A	Hetero	INTRON
SBS	Chr9	3986787	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Homo	INTERGENIC
SBS	Chr10	596779	T-C	Hetero	INTERGENIC
SBS	Chr11	12960484	C-A	Homo	INTERGENIC
SBS	Chr12	3360549	C-T	Hetero	INTERGENIC
SBS	Chr12	6711649	A-T	Hetero	INTERGENIC
SBS	Chr12	12895569	C-T	Homo	INTERGENIC
SBS	Chr12	16276785	C-T	Homo	INTRON
SBS	Chr12	25438456	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	750055	750056	1
Deletion	Chr1	1223069	1223070	1
Deletion	Chr4	3494690	3494691	1
Deletion	Chr1	6361643	6361651	8
Deletion	Chr8	7269001	7426000	156999	3
Deletion	Chr9	8987247	8987257	10
Deletion	Chr12	11007443	11007448	5
Deletion	Chr5	11926061	11926069	8
Deletion	Chr12	16024464	16024465	1
Deletion	Chr6	18110848	18110856	8
Deletion	Chr4	20574506	20574517	11
Deletion	Chr11	23513001	23580000	66999	5
Deletion	Chr7	25951878	25951881	3	OsKitaake07g237250
Deletion	Chr3	31875739	31875755	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6600762	6798711
Inversion	Chr8	6600881	7429111

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes