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Mutant Information

Mutant Name	FN3347-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3347-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24762275 T-G Hetero INTERGENIC
SBS Chr1 24774380 T-A Hetero INTERGENIC
SBS Chr1 24774381 C-A Hetero INTERGENIC
SBS Chr1 40720309 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g442900
SBS Chr2 2459024 A-G Homo INTERGENIC
SBS Chr2 2459100 A-C Homo INTERGENIC
SBS Chr2 2459174 T-C Homo INTERGENIC
SBS Chr2 13429623 C-T Hetero INTERGENIC
SBS Chr2 18328613 C-A Hetero INTERGENIC
SBS Chr2 21343736 G-C Hetero INTRON
SBS Chr2 24239287 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g239600
SBS Chr3 4817402 C-T Hetero INTERGENIC
SBS Chr3 9708629 G-C Hetero INTERGENIC
SBS Chr3 33077535 A-G Homo INTERGENIC
SBS Chr4 2493032 G-A Hetero INTERGENIC
SBS Chr4 14939833 G-A Homo INTERGENIC
SBS Chr4 16453143 A-G Hetero INTERGENIC
SBS Chr4 26295300 C-T Homo INTRON
SBS Chr4 35862983 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g307300
SBS Chr5 5384239 C-T Homo INTERGENIC
SBS Chr5 5793443 G-C Hetero INTERGENIC
SBS Chr5 11171501 G-A Hetero UTR_5_PRIME
SBS Chr5 12892678 G-A Hetero INTERGENIC
SBS Chr5 14148568 A-G Hetero INTERGENIC
SBS Chr6 9905570 C-T Hetero UTR_5_PRIME
SBS Chr6 19367687 T-A Hetero INTERGENIC
SBS Chr7 1406560 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g019900
SBS Chr7 7526008 C-A Hetero INTRON
SBS Chr7 20622017 G-A Homo INTRON
SBS Chr7 25095563 T-A Hetero INTERGENIC
SBS Chr8 2081806 G-A Hetero INTERGENIC
SBS Chr8 2155343 T-G Hetero INTRON
SBS Chr8 2155347 A-T Hetero INTRON
SBS Chr8 2155348 C-T Hetero INTRON
SBS Chr8 7712225 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g071000
SBS Chr8 19782716 G-A Hetero INTERGENIC
SBS Chr8 23037807 T-A Hetero INTERGENIC
SBS Chr8 23882196 T-C Hetero INTERGENIC
SBS Chr9 16609472 G-A Hetero INTERGENIC
SBS Chr10 19863320 T-A Hetero INTERGENIC
SBS Chr11 5308062 C-T Homo INTRON
SBS Chr11 14986873 C-T Hetero INTERGENIC
SBS Chr11 16335056 C-T Hetero INTRON
SBS Chr11 17106539 G-A Hetero INTERGENIC
SBS Chr11 26775367 G-T Hetero INTERGENIC
SBS Chr12 2360053 T-G Hetero INTERGENIC
SBS Chr12 9162503 G-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2156001 2180000 23999 4
Deletion Chr5 7142218 7142220 2
Deletion Chr3 8143121 8143124 3
Deletion Chr5 8848310 8848314 4
Deletion Chr4 10800644 10800650 6
Deletion Chr12 11365807 11365809 2
Deletion Chr10 13393852 13393853 1
Deletion Chr7 16380260 16380261 1
Deletion Chr11 16917910 16917912 2
Deletion Chr10 18119175 18119176 1 OsKitaake10g128200
Deletion Chr7 18427688 18427727 39
Deletion Chr5 20612001 20783000 170999 16
Deletion Chr10 22020643 22020648 5
Deletion Chr3 22802748 22802753 5
Deletion Chr12 23722148 23722149 1
Deletion Chr3 25400895 25400897 2
Deletion Chr1 31349158 31349159 1
Deletion Chr2 34000348 34000357 9
Deletion Chr1 38814959 38814974 15 OsKitaake01g415800

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 30412717 30412720 2
Insertion Chr5 11497394 11497397 2
Insertion Chr11 3971987 3971991 3
Insertion Chr11 19899294 19899297 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 21836911 21876650
Inversion Chr7 21836918 21877439

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 21877436 Chr3 18412266

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24762275	T-G	Hetero	INTERGENIC
SBS	Chr1	24774380	T-A	Hetero	INTERGENIC
SBS	Chr1	24774381	C-A	Hetero	INTERGENIC
SBS	Chr1	40720309	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g442900
SBS	Chr2	2459024	A-G	Homo	INTERGENIC
SBS	Chr2	2459100	A-C	Homo	INTERGENIC
SBS	Chr2	2459174	T-C	Homo	INTERGENIC
SBS	Chr2	13429623	C-T	Hetero	INTERGENIC
SBS	Chr2	18328613	C-A	Hetero	INTERGENIC
SBS	Chr2	21343736	G-C	Hetero	INTRON
SBS	Chr2	24239287	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g239600
SBS	Chr3	4817402	C-T	Hetero	INTERGENIC
SBS	Chr3	9708629	G-C	Hetero	INTERGENIC
SBS	Chr3	33077535	A-G	Homo	INTERGENIC
SBS	Chr4	2493032	G-A	Hetero	INTERGENIC
SBS	Chr4	14939833	G-A	Homo	INTERGENIC
SBS	Chr4	16453143	A-G	Hetero	INTERGENIC
SBS	Chr4	26295300	C-T	Homo	INTRON
SBS	Chr4	35862983	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g307300
SBS	Chr5	5384239	C-T	Homo	INTERGENIC
SBS	Chr5	5793443	G-C	Hetero	INTERGENIC
SBS	Chr5	11171501	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	12892678	G-A	Hetero	INTERGENIC
SBS	Chr5	14148568	A-G	Hetero	INTERGENIC
SBS	Chr6	9905570	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	19367687	T-A	Hetero	INTERGENIC
SBS	Chr7	1406560	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g019900
SBS	Chr7	7526008	C-A	Hetero	INTRON
SBS	Chr7	20622017	G-A	Homo	INTRON
SBS	Chr7	25095563	T-A	Hetero	INTERGENIC
SBS	Chr8	2081806	G-A	Hetero	INTERGENIC
SBS	Chr8	2155343	T-G	Hetero	INTRON
SBS	Chr8	2155347	A-T	Hetero	INTRON
SBS	Chr8	2155348	C-T	Hetero	INTRON
SBS	Chr8	7712225	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g071000
SBS	Chr8	19782716	G-A	Hetero	INTERGENIC
SBS	Chr8	23037807	T-A	Hetero	INTERGENIC
SBS	Chr8	23882196	T-C	Hetero	INTERGENIC
SBS	Chr9	16609472	G-A	Hetero	INTERGENIC
SBS	Chr10	19863320	T-A	Hetero	INTERGENIC
SBS	Chr11	5308062	C-T	Homo	INTRON
SBS	Chr11	14986873	C-T	Hetero	INTERGENIC
SBS	Chr11	16335056	C-T	Hetero	INTRON
SBS	Chr11	17106539	G-A	Hetero	INTERGENIC
SBS	Chr11	26775367	G-T	Hetero	INTERGENIC
SBS	Chr12	2360053	T-G	Hetero	INTERGENIC
SBS	Chr12	9162503	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2156001	2180000	23999	4
Deletion	Chr5	7142218	7142220	2
Deletion	Chr3	8143121	8143124	3
Deletion	Chr5	8848310	8848314	4
Deletion	Chr4	10800644	10800650	6
Deletion	Chr12	11365807	11365809	2
Deletion	Chr10	13393852	13393853	1
Deletion	Chr7	16380260	16380261	1
Deletion	Chr11	16917910	16917912	2
Deletion	Chr10	18119175	18119176	1	OsKitaake10g128200
Deletion	Chr7	18427688	18427727	39
Deletion	Chr5	20612001	20783000	170999	16
Deletion	Chr10	22020643	22020648	5
Deletion	Chr3	22802748	22802753	5
Deletion	Chr12	23722148	23722149	1
Deletion	Chr3	25400895	25400897	2
Deletion	Chr1	31349158	31349159	1
Deletion	Chr2	34000348	34000357	9
Deletion	Chr1	38814959	38814974	15	OsKitaake01g415800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	21836911	21876650
Inversion	Chr7	21836918	21877439

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes