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Mutant Information

Mutant Name	FN3353-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3353-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25427181 C-T Homo INTERGENIC
SBS Chr1 25427182 G-T Homo INTERGENIC
SBS Chr1 25686514 A-T Homo INTERGENIC
SBS Chr2 9433770 C-T Hetero INTERGENIC
SBS Chr2 13134180 T-A Hetero INTERGENIC
SBS Chr2 13322248 T-A Hetero SYNONYMOUS_CODING
SBS Chr3 8502307 C-T Hetero INTERGENIC
SBS Chr3 14848168 A-G Hetero INTERGENIC
SBS Chr3 14848169 A-G Hetero INTERGENIC
SBS Chr3 34157437 G-A Homo INTERGENIC
SBS Chr4 10536622 A-G Hetero SYNONYMOUS_CODING
SBS Chr4 22327772 C-T Hetero INTRON
SBS Chr4 33693335 C-T Hetero INTERGENIC
SBS Chr5 4765893 A-G Homo INTERGENIC
SBS Chr5 11819632 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g096700
SBS Chr5 15757713 T-G Homo INTRON
SBS Chr5 18357761 C-G Hetero INTERGENIC
SBS Chr5 18693064 G-A Hetero INTERGENIC
SBS Chr5 18693068 G-C Hetero INTERGENIC
SBS Chr5 26747928 A-T Hetero INTERGENIC
SBS Chr6 1436629 C-T Homo UTR_5_PRIME
SBS Chr6 3185832 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g044400
SBS Chr6 13389387 C-T Homo INTERGENIC
SBS Chr6 24504401 A-T Hetero INTERGENIC
SBS Chr6 30493742 T-C Hetero INTERGENIC
SBS Chr7 4489897 A-T Hetero INTERGENIC
SBS Chr7 11798168 C-A Homo INTERGENIC
SBS Chr8 9888351 C-G Hetero INTERGENIC
SBS Chr8 11762854 C-A Hetero INTERGENIC
SBS Chr8 18956262 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g140400
SBS Chr8 18956264 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 7647357 C-T Hetero INTRON
SBS Chr9 7647358 A-T Hetero INTRON
SBS Chr9 10243433 G-A Hetero INTERGENIC
SBS Chr10 3150127 C-A Hetero INTERGENIC
SBS Chr10 3150130 C-A Hetero INTERGENIC
SBS Chr10 5949960 C-A Homo INTERGENIC
SBS Chr10 10290194 C-T Hetero INTERGENIC
SBS Chr10 17529236 C-A Hetero INTERGENIC
SBS Chr10 19754202 C-T Hetero INTRON
SBS Chr11 7417685 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g083800
SBS Chr11 12860361 G-A Hetero INTERGENIC
SBS Chr11 16032701 G-A Hetero INTERGENIC
SBS Chr11 20242257 C-A Hetero SYNONYMOUS_CODING
SBS Chr12 6219752 G-A Hetero INTERGENIC
SBS Chr12 11988925 C-T Homo NON_SYNONYMOUS_CODING OsKitaake12g104800

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3316727 3316728 1
Deletion Chr3 3379130 3379132 2
Deletion Chr2 8776703 8776707 4
Deletion Chr1 10858779 10858787 8 OsKitaake01g133900
Deletion Chr6 13428212 13428215 3
Deletion Chr8 14244624 14244631 7
Deletion Chr7 15169784 15169799 15
Deletion Chr3 15352926 15352927 1
Deletion Chr12 15543445 15543446 1
Deletion Chr5 16233420 16233428 8
Deletion Chr9 16759680 16759697 17
Deletion Chr10 20668001 20700000 31999 5
Deletion Chr6 21271616 21271617 1 OsKitaake06g188500
Deletion Chr5 22846045 22846047 2
Deletion Chr4 23028153 23028157 4
Deletion Chr2 24332750 24332752 2
Deletion Chr4 26107623 26107629 6
Deletion Chr5 28679789 28679815 26 OsKitaake05g269400
Deletion Chr5 28705395 28705396 1
Deletion Chr3 34642030 34642045 15 OsKitaake03g376900
Deletion Chr1 38706395 38706398 3 OsKitaake01g413900

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 333710 333713 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 9662062 9684553

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 9684526 Chr5 18993675
Translocation Chr9 9724440 Chr5 18993685

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25427181	C-T	Homo	INTERGENIC
SBS	Chr1	25427182	G-T	Homo	INTERGENIC
SBS	Chr1	25686514	A-T	Homo	INTERGENIC
SBS	Chr2	9433770	C-T	Hetero	INTERGENIC
SBS	Chr2	13134180	T-A	Hetero	INTERGENIC
SBS	Chr2	13322248	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	8502307	C-T	Hetero	INTERGENIC
SBS	Chr3	14848168	A-G	Hetero	INTERGENIC
SBS	Chr3	14848169	A-G	Hetero	INTERGENIC
SBS	Chr3	34157437	G-A	Homo	INTERGENIC
SBS	Chr4	10536622	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	22327772	C-T	Hetero	INTRON
SBS	Chr4	33693335	C-T	Hetero	INTERGENIC
SBS	Chr5	4765893	A-G	Homo	INTERGENIC
SBS	Chr5	11819632	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g096700
SBS	Chr5	15757713	T-G	Homo	INTRON
SBS	Chr5	18357761	C-G	Hetero	INTERGENIC
SBS	Chr5	18693064	G-A	Hetero	INTERGENIC
SBS	Chr5	18693068	G-C	Hetero	INTERGENIC
SBS	Chr5	26747928	A-T	Hetero	INTERGENIC
SBS	Chr6	1436629	C-T	Homo	UTR_5_PRIME
SBS	Chr6	3185832	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g044400
SBS	Chr6	13389387	C-T	Homo	INTERGENIC
SBS	Chr6	24504401	A-T	Hetero	INTERGENIC
SBS	Chr6	30493742	T-C	Hetero	INTERGENIC
SBS	Chr7	4489897	A-T	Hetero	INTERGENIC
SBS	Chr7	11798168	C-A	Homo	INTERGENIC
SBS	Chr8	9888351	C-G	Hetero	INTERGENIC
SBS	Chr8	11762854	C-A	Hetero	INTERGENIC
SBS	Chr8	18956262	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g140400
SBS	Chr8	18956264	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	7647357	C-T	Hetero	INTRON
SBS	Chr9	7647358	A-T	Hetero	INTRON
SBS	Chr9	10243433	G-A	Hetero	INTERGENIC
SBS	Chr10	3150127	C-A	Hetero	INTERGENIC
SBS	Chr10	3150130	C-A	Hetero	INTERGENIC
SBS	Chr10	5949960	C-A	Homo	INTERGENIC
SBS	Chr10	10290194	C-T	Hetero	INTERGENIC
SBS	Chr10	17529236	C-A	Hetero	INTERGENIC
SBS	Chr10	19754202	C-T	Hetero	INTRON
SBS	Chr11	7417685	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g083800
SBS	Chr11	12860361	G-A	Hetero	INTERGENIC
SBS	Chr11	16032701	G-A	Hetero	INTERGENIC
SBS	Chr11	20242257	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	6219752	G-A	Hetero	INTERGENIC
SBS	Chr12	11988925	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g104800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3316727	3316728	1
Deletion	Chr3	3379130	3379132	2
Deletion	Chr2	8776703	8776707	4
Deletion	Chr1	10858779	10858787	8	OsKitaake01g133900
Deletion	Chr6	13428212	13428215	3
Deletion	Chr8	14244624	14244631	7
Deletion	Chr7	15169784	15169799	15
Deletion	Chr3	15352926	15352927	1
Deletion	Chr12	15543445	15543446	1
Deletion	Chr5	16233420	16233428	8
Deletion	Chr9	16759680	16759697	17
Deletion	Chr10	20668001	20700000	31999	5
Deletion	Chr6	21271616	21271617	1	OsKitaake06g188500
Deletion	Chr5	22846045	22846047	2
Deletion	Chr4	23028153	23028157	4
Deletion	Chr2	24332750	24332752	2
Deletion	Chr4	26107623	26107629	6
Deletion	Chr5	28679789	28679815	26	OsKitaake05g269400
Deletion	Chr5	28705395	28705396	1
Deletion	Chr3	34642030	34642045	15	OsKitaake03g376900
Deletion	Chr1	38706395	38706398	3	OsKitaake01g413900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	9662062	9684553

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes