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Mutant Information

Mutant Name	FN3354-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3354-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4648505 G-A Hetero INTERGENIC
SBS Chr1 11683262 A-C Hetero INTERGENIC
SBS Chr1 12449509 C-G Hetero INTRON
SBS Chr1 17323208 C-A Hetero INTERGENIC
SBS Chr1 34986693 C-T Hetero INTERGENIC
SBS Chr1 36732603 A-T Hetero INTERGENIC
SBS Chr2 5594922 A-T Homo UTR_3_PRIME
SBS Chr2 14512464 C-T Homo INTERGENIC
SBS Chr2 15208779 C-A Hetero INTERGENIC
SBS Chr2 25667913 C-T Homo INTERGENIC
SBS Chr2 28236260 C-T Hetero INTERGENIC
SBS Chr2 34694860 G-A Hetero INTERGENIC
SBS Chr2 35505042 C-T Hetero INTERGENIC
SBS Chr3 10268080 T-A Homo INTERGENIC
SBS Chr3 13138244 T-A Hetero INTERGENIC
SBS Chr3 18536452 G-A Hetero INTRON
SBS Chr3 27085282 T-C Hetero INTERGENIC
SBS Chr3 31817576 C-A Hetero INTERGENIC
SBS Chr4 2608040 T-C Hetero INTERGENIC
SBS Chr4 9890490 C-T Hetero INTERGENIC
SBS Chr4 11809816 T-A Hetero INTERGENIC
SBS Chr4 20677770 A-C Hetero INTERGENIC
SBS Chr5 12066690 G-A Hetero INTERGENIC
SBS Chr5 22042930 T-A Hetero INTERGENIC
SBS Chr6 7714656 A-T Hetero INTERGENIC
SBS Chr6 16145512 G-A Hetero INTERGENIC
SBS Chr6 24076160 A-G Hetero INTERGENIC
SBS Chr6 27233828 A-G Hetero INTERGENIC
SBS Chr7 252047 G-A Homo INTERGENIC
SBS Chr7 1829993 T-A Hetero INTERGENIC
SBS Chr7 10384433 G-T Hetero INTERGENIC
SBS Chr7 10384436 C-T Hetero INTERGENIC
SBS Chr7 12703188 A-G Hetero INTRON
SBS Chr7 14400469 C-G Hetero INTERGENIC
SBS Chr7 16763242 T-C Hetero INTERGENIC
SBS Chr8 23256195 C-T Hetero UTR_5_PRIME
SBS Chr8 29160826 G-A Hetero UTR_3_PRIME
SBS Chr9 1236242 C-T Hetero INTERGENIC
SBS Chr9 12333197 G-A Hetero INTERGENIC
SBS Chr9 13498645 A-G Hetero INTERGENIC
SBS Chr10 13016779 T-A Hetero INTERGENIC
SBS Chr10 13016780 C-A Hetero INTERGENIC
SBS Chr10 23732016 G-C Homo INTERGENIC
SBS Chr11 8314267 C-T Hetero INTERGENIC
SBS Chr11 8966386 C-G Homo INTERGENIC
SBS Chr11 15124437 A-T Hetero INTERGENIC
SBS Chr11 28746082 C-T Hetero INTERGENIC
SBS Chr11 28795707 A-T Hetero INTRON
SBS Chr12 7758987 G-A Hetero INTERGENIC
SBS Chr12 12856693 C-A Hetero INTERGENIC
SBS Chr12 13717317 C-A Hetero INTERGENIC
SBS Chr12 16136794 G-C Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4064496 4064497 1
Deletion Chr7 5864001 5951000 86999 7
Deletion Chr6 6466585 6466587 2
Deletion Chr10 8890619 8890620 1
Deletion Chr7 22568945 22568952 7
Deletion Chr1 22721018 22721020 2
Deletion Chr1 23937933 23937934 1
Deletion Chr3 33623912 33623913 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 23824876 23824879 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 7422506 7563137 OsKitaake01g094800
Inversion Chr1 7422521 7563143 OsKitaake01g094800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2243995 Chr7 5862640 OsKitaake07g071200
Translocation Chr9 2247584 Chr1 36806082 OsKitaake01g391400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4648505	G-A	Hetero	INTERGENIC
SBS	Chr1	11683262	A-C	Hetero	INTERGENIC
SBS	Chr1	12449509	C-G	Hetero	INTRON
SBS	Chr1	17323208	C-A	Hetero	INTERGENIC
SBS	Chr1	34986693	C-T	Hetero	INTERGENIC
SBS	Chr1	36732603	A-T	Hetero	INTERGENIC
SBS	Chr2	5594922	A-T	Homo	UTR_3_PRIME
SBS	Chr2	14512464	C-T	Homo	INTERGENIC
SBS	Chr2	15208779	C-A	Hetero	INTERGENIC
SBS	Chr2	25667913	C-T	Homo	INTERGENIC
SBS	Chr2	28236260	C-T	Hetero	INTERGENIC
SBS	Chr2	34694860	G-A	Hetero	INTERGENIC
SBS	Chr2	35505042	C-T	Hetero	INTERGENIC
SBS	Chr3	10268080	T-A	Homo	INTERGENIC
SBS	Chr3	13138244	T-A	Hetero	INTERGENIC
SBS	Chr3	18536452	G-A	Hetero	INTRON
SBS	Chr3	27085282	T-C	Hetero	INTERGENIC
SBS	Chr3	31817576	C-A	Hetero	INTERGENIC
SBS	Chr4	2608040	T-C	Hetero	INTERGENIC
SBS	Chr4	9890490	C-T	Hetero	INTERGENIC
SBS	Chr4	11809816	T-A	Hetero	INTERGENIC
SBS	Chr4	20677770	A-C	Hetero	INTERGENIC
SBS	Chr5	12066690	G-A	Hetero	INTERGENIC
SBS	Chr5	22042930	T-A	Hetero	INTERGENIC
SBS	Chr6	7714656	A-T	Hetero	INTERGENIC
SBS	Chr6	16145512	G-A	Hetero	INTERGENIC
SBS	Chr6	24076160	A-G	Hetero	INTERGENIC
SBS	Chr6	27233828	A-G	Hetero	INTERGENIC
SBS	Chr7	252047	G-A	Homo	INTERGENIC
SBS	Chr7	1829993	T-A	Hetero	INTERGENIC
SBS	Chr7	10384433	G-T	Hetero	INTERGENIC
SBS	Chr7	10384436	C-T	Hetero	INTERGENIC
SBS	Chr7	12703188	A-G	Hetero	INTRON
SBS	Chr7	14400469	C-G	Hetero	INTERGENIC
SBS	Chr7	16763242	T-C	Hetero	INTERGENIC
SBS	Chr8	23256195	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	29160826	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	1236242	C-T	Hetero	INTERGENIC
SBS	Chr9	12333197	G-A	Hetero	INTERGENIC
SBS	Chr9	13498645	A-G	Hetero	INTERGENIC
SBS	Chr10	13016779	T-A	Hetero	INTERGENIC
SBS	Chr10	13016780	C-A	Hetero	INTERGENIC
SBS	Chr10	23732016	G-C	Homo	INTERGENIC
SBS	Chr11	8314267	C-T	Hetero	INTERGENIC
SBS	Chr11	8966386	C-G	Homo	INTERGENIC
SBS	Chr11	15124437	A-T	Hetero	INTERGENIC
SBS	Chr11	28746082	C-T	Hetero	INTERGENIC
SBS	Chr11	28795707	A-T	Hetero	INTRON
SBS	Chr12	7758987	G-A	Hetero	INTERGENIC
SBS	Chr12	12856693	C-A	Hetero	INTERGENIC
SBS	Chr12	13717317	C-A	Hetero	INTERGENIC
SBS	Chr12	16136794	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4064496	4064497	1
Deletion	Chr7	5864001	5951000	86999	7
Deletion	Chr6	6466585	6466587	2
Deletion	Chr10	8890619	8890620	1
Deletion	Chr7	22568945	22568952	7
Deletion	Chr1	22721018	22721020	2
Deletion	Chr1	23937933	23937934	1
Deletion	Chr3	33623912	33623913	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7422506	7563137	OsKitaake01g094800
Inversion	Chr1	7422521	7563143	OsKitaake01g094800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes