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Mutant Information

Mutant Name	FN3355-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3355-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9526081 T-A Hetero INTRON
SBS Chr1 17889413 G-A Homo INTERGENIC
SBS Chr1 21878708 G-A Homo INTERGENIC
SBS Chr1 24312872 A-G Homo INTERGENIC
SBS Chr1 29608951 G-A Homo INTERGENIC
SBS Chr1 34265643 C-T Hetero INTERGENIC
SBS Chr2 11937537 G-A Homo INTERGENIC
SBS Chr2 16957026 T-G Homo INTERGENIC
SBS Chr2 19086776 C-T Hetero INTERGENIC
SBS Chr2 21022765 C-T Hetero INTERGENIC
SBS Chr2 34254916 A-T Hetero INTERGENIC
SBS Chr2 34850231 C-G Hetero UTR_3_PRIME
SBS Chr3 16548254 A-G Hetero INTERGENIC
SBS Chr3 19956619 G-T Hetero INTERGENIC
SBS Chr3 21967569 C-T Hetero INTERGENIC
SBS Chr3 31992421 T-C Hetero INTERGENIC
SBS Chr4 314195 C-T Hetero INTERGENIC
SBS Chr4 4784631 C-A Homo INTERGENIC
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 24898818 T-C Hetero INTERGENIC
SBS Chr4 25832878 T-C Hetero INTRON
SBS Chr5 8891141 C-A Hetero INTERGENIC
SBS Chr5 8891142 A-C Hetero INTERGENIC
SBS Chr5 23939928 C-A Hetero INTERGENIC
SBS Chr6 1211544 C-T Hetero INTERGENIC
SBS Chr6 11654378 C-T Hetero INTERGENIC
SBS Chr6 11654379 A-G Hetero INTERGENIC
SBS Chr6 13518686 G-A Hetero INTERGENIC
SBS Chr6 17252404 A-G Hetero INTERGENIC
SBS Chr7 988969 G-A Homo INTERGENIC
SBS Chr7 8839613 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g093400
SBS Chr7 13425993 G-A Hetero INTERGENIC
SBS Chr7 16778120 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g137500
SBS Chr7 26670401 C-T Hetero INTERGENIC
SBS Chr8 18139562 G-A Hetero INTERGENIC
SBS Chr8 26002924 T-A Homo INTERGENIC
SBS Chr9 2918523 G-A Hetero INTERGENIC
SBS Chr9 6262152 G-A Homo INTERGENIC
SBS Chr9 6931223 G-A Hetero INTERGENIC
SBS Chr9 12789410 A-G Homo INTERGENIC
SBS Chr10 13347160 A-G Hetero INTERGENIC
SBS Chr10 18224096 C-T Hetero INTRON
SBS Chr10 20816641 G-C Hetero INTERGENIC
SBS Chr11 16079788 G-A Hetero INTERGENIC
SBS Chr11 16893256 G-A Hetero INTERGENIC
SBS Chr11 26386852 C-A Hetero INTERGENIC
SBS Chr11 26812953 C-G Hetero INTERGENIC
SBS Chr12 345435 G-A Hetero INTERGENIC
SBS Chr12 4639096 T-C Hetero INTERGENIC
SBS Chr12 10001140 C-T Homo INTERGENIC
SBS Chr12 11264378 G-A Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1395234 1395236 2
Deletion Chr7 5326510 5326511 1 OsKitaake07g064900
Deletion Chr6 8703021 8703022 1
Deletion Chr1 11684916 11684922 6 OsKitaake01g140900
Deletion Chr5 12981111 12981112 1
Deletion Chr11 16761055 16761062 7 OsKitaake11g132400
Deletion Chr4 20521362 20521363 1
Deletion Chr1 22621434 22621437 3
Deletion Chr3 26828795 26828804 9
Deletion Chr2 33296261 33296268 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 6246599 6246603 3
Insertion Chr7 19252260 19252263 2
Insertion Chr8 17738797 17738799 1
Insertion Chr10 13521859 13521862 2
Insertion Chr10 8267973 8267982 8

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 19146228 19525422
Inversion Chr8 19146231 19525428

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 3401984 Chr3 37591299 OsKitaake06g047800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9526081	T-A	Hetero	INTRON
SBS	Chr1	17889413	G-A	Homo	INTERGENIC
SBS	Chr1	21878708	G-A	Homo	INTERGENIC
SBS	Chr1	24312872	A-G	Homo	INTERGENIC
SBS	Chr1	29608951	G-A	Homo	INTERGENIC
SBS	Chr1	34265643	C-T	Hetero	INTERGENIC
SBS	Chr2	11937537	G-A	Homo	INTERGENIC
SBS	Chr2	16957026	T-G	Homo	INTERGENIC
SBS	Chr2	19086776	C-T	Hetero	INTERGENIC
SBS	Chr2	21022765	C-T	Hetero	INTERGENIC
SBS	Chr2	34254916	A-T	Hetero	INTERGENIC
SBS	Chr2	34850231	C-G	Hetero	UTR_3_PRIME
SBS	Chr3	16548254	A-G	Hetero	INTERGENIC
SBS	Chr3	19956619	G-T	Hetero	INTERGENIC
SBS	Chr3	21967569	C-T	Hetero	INTERGENIC
SBS	Chr3	31992421	T-C	Hetero	INTERGENIC
SBS	Chr4	314195	C-T	Hetero	INTERGENIC
SBS	Chr4	4784631	C-A	Homo	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	24898818	T-C	Hetero	INTERGENIC
SBS	Chr4	25832878	T-C	Hetero	INTRON
SBS	Chr5	8891141	C-A	Hetero	INTERGENIC
SBS	Chr5	8891142	A-C	Hetero	INTERGENIC
SBS	Chr5	23939928	C-A	Hetero	INTERGENIC
SBS	Chr6	1211544	C-T	Hetero	INTERGENIC
SBS	Chr6	11654378	C-T	Hetero	INTERGENIC
SBS	Chr6	11654379	A-G	Hetero	INTERGENIC
SBS	Chr6	13518686	G-A	Hetero	INTERGENIC
SBS	Chr6	17252404	A-G	Hetero	INTERGENIC
SBS	Chr7	988969	G-A	Homo	INTERGENIC
SBS	Chr7	8839613	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g093400
SBS	Chr7	13425993	G-A	Hetero	INTERGENIC
SBS	Chr7	16778120	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g137500
SBS	Chr7	26670401	C-T	Hetero	INTERGENIC
SBS	Chr8	18139562	G-A	Hetero	INTERGENIC
SBS	Chr8	26002924	T-A	Homo	INTERGENIC
SBS	Chr9	2918523	G-A	Hetero	INTERGENIC
SBS	Chr9	6262152	G-A	Homo	INTERGENIC
SBS	Chr9	6931223	G-A	Hetero	INTERGENIC
SBS	Chr9	12789410	A-G	Homo	INTERGENIC
SBS	Chr10	13347160	A-G	Hetero	INTERGENIC
SBS	Chr10	18224096	C-T	Hetero	INTRON
SBS	Chr10	20816641	G-C	Hetero	INTERGENIC
SBS	Chr11	16079788	G-A	Hetero	INTERGENIC
SBS	Chr11	16893256	G-A	Hetero	INTERGENIC
SBS	Chr11	26386852	C-A	Hetero	INTERGENIC
SBS	Chr11	26812953	C-G	Hetero	INTERGENIC
SBS	Chr12	345435	G-A	Hetero	INTERGENIC
SBS	Chr12	4639096	T-C	Hetero	INTERGENIC
SBS	Chr12	10001140	C-T	Homo	INTERGENIC
SBS	Chr12	11264378	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1395234	1395236	2
Deletion	Chr7	5326510	5326511	1	OsKitaake07g064900
Deletion	Chr6	8703021	8703022	1
Deletion	Chr1	11684916	11684922	6	OsKitaake01g140900
Deletion	Chr5	12981111	12981112	1
Deletion	Chr11	16761055	16761062	7	OsKitaake11g132400
Deletion	Chr4	20521362	20521363	1
Deletion	Chr1	22621434	22621437	3
Deletion	Chr3	26828795	26828804	9
Deletion	Chr2	33296261	33296268	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	19146228	19525422
Inversion	Chr8	19146231	19525428

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes