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Mutant Information

Mutant Name	FN3356-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3356-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 65877 C-A Hetero INTERGENIC
SBS Chr1 757688 G-A Hetero INTERGENIC
SBS Chr1 6207421 G-T Hetero INTERGENIC
SBS Chr1 30068405 G-T Hetero INTERGENIC
SBS Chr1 35325344 C-T Hetero INTRON
SBS Chr2 2819046 A-T Homo INTERGENIC
SBS Chr2 10281682 G-A Homo INTERGENIC
SBS Chr2 19260833 G-A Hetero INTERGENIC
SBS Chr2 20465586 G-A Hetero INTERGENIC
SBS Chr2 35960400 C-T Hetero INTERGENIC
SBS Chr3 5488617 T-A Hetero INTERGENIC
SBS Chr3 12961458 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g174300
SBS Chr3 17866023 G-A Hetero INTERGENIC
SBS Chr3 37673041 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g423200
SBS Chr3 37675202 A-T Hetero INTRON
SBS Chr4 5714369 T-G Hetero INTERGENIC
SBS Chr4 7286652 G-A Homo INTERGENIC
SBS Chr4 9480338 G-A Hetero INTERGENIC
SBS Chr4 10823261 C-T Homo INTERGENIC
SBS Chr4 18061156 C-G Hetero INTERGENIC
SBS Chr4 19237757 T-C Hetero INTERGENIC
SBS Chr4 30188730 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g232300
SBS Chr5 15860364 G-A Hetero INTERGENIC
SBS Chr5 25348723 A-T Hetero INTERGENIC
SBS Chr6 25262801 T-C Homo INTERGENIC
SBS Chr7 3741462 T-C Homo NON_SYNONYMOUS_CODING OsKitaake07g048150
SBS Chr7 17276710 G-A Hetero INTERGENIC
SBS Chr7 17893784 C-T Hetero INTERGENIC
SBS Chr7 26985843 G-T Hetero INTERGENIC
SBS Chr8 6639742 A-C Hetero INTERGENIC
SBS Chr8 20930644 T-A Hetero INTERGENIC
SBS Chr8 21002408 G-A Homo INTERGENIC
SBS Chr8 23950056 C-A Homo INTERGENIC
SBS Chr8 28359418 G-A Hetero INTERGENIC
SBS Chr8 28527154 G-A Hetero INTERGENIC
SBS Chr9 17593546 G-A Hetero UTR_3_PRIME
SBS Chr11 332793 A-T Hetero INTERGENIC
SBS Chr11 17405182 C-T Hetero INTERGENIC
SBS Chr11 23631562 C-T Hetero INTERGENIC
SBS Chr11 26636180 C-A Hetero INTRON
SBS Chr12 6833987 G-A Hetero INTERGENIC
SBS Chr12 14650542 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 157001 228000 70999 12
Deletion Chr8 1041654 1041656 2
Deletion Chr5 1408517 1408519 2
Deletion Chr1 2270284 2270296 12
Deletion Chr10 3179488 3179496 8
Deletion Chr8 3526599 3526601 2
Deletion Chr10 3798641 3798655 14
Deletion Chr2 4183722 4183725 3
Deletion Chr9 5859908 5859911 3
Deletion Chr9 8313027 8313028 1
Deletion Chr10 14553001 14803000 249999 17
Deletion Chr10 16361154 16361155 1
Deletion Chr3 19328635 19328643 8
Deletion Chr5 23527231 23527233 2
Deletion Chr10 23539072 23539074 2
Deletion Chr12 25386161 25386163 2
Deletion Chr11 25822337 25822345 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 18400050 18400053 2
Insertion Chr10 7099266 7099276 9

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 7386610 7432100
Inversion Chr6 17782569 17857867
Inversion Chr6 17782614 17857881

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 7386000 Chr4 19785841
Translocation Chr8 7391724 Chr4 19785718
Translocation Chr11 29434993 Chr6 1615092 OsKitaake11g241400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	65877	C-A	Hetero	INTERGENIC
SBS	Chr1	757688	G-A	Hetero	INTERGENIC
SBS	Chr1	6207421	G-T	Hetero	INTERGENIC
SBS	Chr1	30068405	G-T	Hetero	INTERGENIC
SBS	Chr1	35325344	C-T	Hetero	INTRON
SBS	Chr2	2819046	A-T	Homo	INTERGENIC
SBS	Chr2	10281682	G-A	Homo	INTERGENIC
SBS	Chr2	19260833	G-A	Hetero	INTERGENIC
SBS	Chr2	20465586	G-A	Hetero	INTERGENIC
SBS	Chr2	35960400	C-T	Hetero	INTERGENIC
SBS	Chr3	5488617	T-A	Hetero	INTERGENIC
SBS	Chr3	12961458	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g174300
SBS	Chr3	17866023	G-A	Hetero	INTERGENIC
SBS	Chr3	37673041	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g423200
SBS	Chr3	37675202	A-T	Hetero	INTRON
SBS	Chr4	5714369	T-G	Hetero	INTERGENIC
SBS	Chr4	7286652	G-A	Homo	INTERGENIC
SBS	Chr4	9480338	G-A	Hetero	INTERGENIC
SBS	Chr4	10823261	C-T	Homo	INTERGENIC
SBS	Chr4	18061156	C-G	Hetero	INTERGENIC
SBS	Chr4	19237757	T-C	Hetero	INTERGENIC
SBS	Chr4	30188730	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g232300
SBS	Chr5	15860364	G-A	Hetero	INTERGENIC
SBS	Chr5	25348723	A-T	Hetero	INTERGENIC
SBS	Chr6	25262801	T-C	Homo	INTERGENIC
SBS	Chr7	3741462	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g048150
SBS	Chr7	17276710	G-A	Hetero	INTERGENIC
SBS	Chr7	17893784	C-T	Hetero	INTERGENIC
SBS	Chr7	26985843	G-T	Hetero	INTERGENIC
SBS	Chr8	6639742	A-C	Hetero	INTERGENIC
SBS	Chr8	20930644	T-A	Hetero	INTERGENIC
SBS	Chr8	21002408	G-A	Homo	INTERGENIC
SBS	Chr8	23950056	C-A	Homo	INTERGENIC
SBS	Chr8	28359418	G-A	Hetero	INTERGENIC
SBS	Chr8	28527154	G-A	Hetero	INTERGENIC
SBS	Chr9	17593546	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	332793	A-T	Hetero	INTERGENIC
SBS	Chr11	17405182	C-T	Hetero	INTERGENIC
SBS	Chr11	23631562	C-T	Hetero	INTERGENIC
SBS	Chr11	26636180	C-A	Hetero	INTRON
SBS	Chr12	6833987	G-A	Hetero	INTERGENIC
SBS	Chr12	14650542	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	157001	228000	70999	12
Deletion	Chr8	1041654	1041656	2
Deletion	Chr5	1408517	1408519	2
Deletion	Chr1	2270284	2270296	12
Deletion	Chr10	3179488	3179496	8
Deletion	Chr8	3526599	3526601	2
Deletion	Chr10	3798641	3798655	14
Deletion	Chr2	4183722	4183725	3
Deletion	Chr9	5859908	5859911	3
Deletion	Chr9	8313027	8313028	1
Deletion	Chr10	14553001	14803000	249999	17
Deletion	Chr10	16361154	16361155	1
Deletion	Chr3	19328635	19328643	8
Deletion	Chr5	23527231	23527233	2
Deletion	Chr10	23539072	23539074	2
Deletion	Chr12	25386161	25386163	2
Deletion	Chr11	25822337	25822345	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7386610	7432100
Inversion	Chr6	17782569	17857867
Inversion	Chr6	17782614	17857881

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes