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Mutant Information

Mutant Name	FN3357-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3357-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 33423538 T-A Hetero INTERGENIC
SBS Chr2 6598941 A-C Hetero INTERGENIC
SBS Chr2 24556683 A-G Homo INTERGENIC
SBS Chr3 16402418 A-G Homo INTERGENIC
SBS Chr3 16740788 A-C Homo INTERGENIC
SBS Chr3 20569626 C-T Hetero INTERGENIC
SBS Chr4 12151502 A-G Homo INTERGENIC
SBS Chr4 12278540 A-G Homo INTERGENIC
SBS Chr4 16699492 T-A Hetero INTRON
SBS Chr4 21305842 T-A Hetero INTERGENIC
SBS Chr4 26224551 A-T Hetero INTERGENIC
SBS Chr4 35571952 C-T Homo INTERGENIC
SBS Chr5 14565379 G-T Homo INTERGENIC
SBS Chr5 18374455 C-A Homo INTERGENIC
SBS Chr6 134120 C-T Hetero INTERGENIC
SBS Chr6 9333291 T-G Homo INTERGENIC
SBS Chr7 5929093 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g071800
SBS Chr7 12234079 T-A Hetero INTERGENIC
SBS Chr7 20904282 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g172400
SBS Chr7 29454389 G-T Hetero STOP_GAINED OsKitaake07g283400
SBS Chr8 8433089 C-T Hetero INTERGENIC
SBS Chr8 15416071 A-T Hetero INTERGENIC
SBS Chr9 3260987 G-A Hetero INTERGENIC
SBS Chr10 4631461 A-G Homo INTERGENIC
SBS Chr11 12824060 T-C Homo INTERGENIC
SBS Chr11 16778239 G-A Homo INTERGENIC
SBS Chr11 17164113 C-T Homo INTERGENIC
SBS Chr12 8967100 T-A Hetero INTERGENIC
SBS Chr12 15358040 T-G Hetero INTERGENIC
SBS Chr12 16925288 G-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 486378 486384 6
Deletion Chr5 2079154 2079155 1
Deletion Chr9 3674671 3674677 6
Deletion Chr8 6292789 6292793 4
Deletion Chr10 6293536 6293552 16
Deletion Chr4 6534575 6534582 7
Deletion Chr2 11768143 11768154 11
Deletion Chr11 11792096 11792097 1
Deletion Chr11 14449069 14449077 8
Deletion Chr3 14522594 14522599 5
Deletion Chr2 15393658 15393665 7
Deletion Chr5 15628288 15628294 6
Deletion Chr4 16218581 16218584 3
Deletion Chr1 16744090 16744093 3
Deletion Chr1 16765391 16765394 3
Deletion Chr11 17743771 17743774 3
Deletion Chr11 20580580 20580589 9
Deletion Chr4 23129473 23129474 1
Deletion Chr3 25238000 25238010 10
Deletion Chr3 25593083 25593084 1
Deletion Chr4 26151787 26151789 2
Deletion Chr4 26172496 26172503 7
Deletion Chr6 28204637 28204643 6 OsKitaake06g257100

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14907151 14907154 2
Insertion Chr6 13707497 13707501 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 7586436 7588650
Inversion Chr10 7586786 7588657
Inversion Chr4 35419238 35506305
Inversion Chr4 35419246 35506329

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 7586445 Chr4 6832138
Translocation Chr10 7586782 Chr4 6832137

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33423538	T-A	Hetero	INTERGENIC
SBS	Chr2	6598941	A-C	Hetero	INTERGENIC
SBS	Chr2	24556683	A-G	Homo	INTERGENIC
SBS	Chr3	16402418	A-G	Homo	INTERGENIC
SBS	Chr3	16740788	A-C	Homo	INTERGENIC
SBS	Chr3	20569626	C-T	Hetero	INTERGENIC
SBS	Chr4	12151502	A-G	Homo	INTERGENIC
SBS	Chr4	12278540	A-G	Homo	INTERGENIC
SBS	Chr4	16699492	T-A	Hetero	INTRON
SBS	Chr4	21305842	T-A	Hetero	INTERGENIC
SBS	Chr4	26224551	A-T	Hetero	INTERGENIC
SBS	Chr4	35571952	C-T	Homo	INTERGENIC
SBS	Chr5	14565379	G-T	Homo	INTERGENIC
SBS	Chr5	18374455	C-A	Homo	INTERGENIC
SBS	Chr6	134120	C-T	Hetero	INTERGENIC
SBS	Chr6	9333291	T-G	Homo	INTERGENIC
SBS	Chr7	5929093	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g071800
SBS	Chr7	12234079	T-A	Hetero	INTERGENIC
SBS	Chr7	20904282	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g172400
SBS	Chr7	29454389	G-T	Hetero	STOP_GAINED	OsKitaake07g283400
SBS	Chr8	8433089	C-T	Hetero	INTERGENIC
SBS	Chr8	15416071	A-T	Hetero	INTERGENIC
SBS	Chr9	3260987	G-A	Hetero	INTERGENIC
SBS	Chr10	4631461	A-G	Homo	INTERGENIC
SBS	Chr11	12824060	T-C	Homo	INTERGENIC
SBS	Chr11	16778239	G-A	Homo	INTERGENIC
SBS	Chr11	17164113	C-T	Homo	INTERGENIC
SBS	Chr12	8967100	T-A	Hetero	INTERGENIC
SBS	Chr12	15358040	T-G	Hetero	INTERGENIC
SBS	Chr12	16925288	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	486378	486384	6
Deletion	Chr5	2079154	2079155	1
Deletion	Chr9	3674671	3674677	6
Deletion	Chr8	6292789	6292793	4
Deletion	Chr10	6293536	6293552	16
Deletion	Chr4	6534575	6534582	7
Deletion	Chr2	11768143	11768154	11
Deletion	Chr11	11792096	11792097	1
Deletion	Chr11	14449069	14449077	8
Deletion	Chr3	14522594	14522599	5
Deletion	Chr2	15393658	15393665	7
Deletion	Chr5	15628288	15628294	6
Deletion	Chr4	16218581	16218584	3
Deletion	Chr1	16744090	16744093	3
Deletion	Chr1	16765391	16765394	3
Deletion	Chr11	17743771	17743774	3
Deletion	Chr11	20580580	20580589	9
Deletion	Chr4	23129473	23129474	1
Deletion	Chr3	25238000	25238010	10
Deletion	Chr3	25593083	25593084	1
Deletion	Chr4	26151787	26151789	2
Deletion	Chr4	26172496	26172503	7
Deletion	Chr6	28204637	28204643	6	OsKitaake06g257100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7586436	7588650
Inversion	Chr10	7586786	7588657
Inversion	Chr4	35419238	35506305
Inversion	Chr4	35419246	35506329

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes