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Mutant Information

Mutant Name	FN3358-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3358-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1471281 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g018300
SBS Chr1 13752278 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 14321617 C-T Hetero INTERGENIC
SBS Chr1 16026524 C-T Hetero INTERGENIC
SBS Chr1 33809584 T-C Hetero INTERGENIC
SBS Chr2 1135121 T-C Hetero INTERGENIC
SBS Chr2 3044986 T-A Hetero INTERGENIC
SBS Chr2 17144763 C-T Hetero INTERGENIC
SBS Chr2 20699023 T-C Hetero INTERGENIC
SBS Chr2 25936269 G-A Hetero INTERGENIC
SBS Chr3 6221257 T-C Hetero INTERGENIC
SBS Chr3 9990901 T-C Homo INTERGENIC
SBS Chr3 10916021 G-T Homo INTERGENIC
SBS Chr3 12285875 C-T Homo INTERGENIC
SBS Chr3 16415326 A-G Hetero INTERGENIC
SBS Chr3 22507462 A-G Hetero INTERGENIC
SBS Chr3 22600247 C-A Hetero INTERGENIC
SBS Chr3 26369065 G-T Hetero INTERGENIC
SBS Chr4 3682722 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g018100
SBS Chr4 18761030 T-C Hetero INTERGENIC
SBS Chr5 16633916 C-T Hetero INTERGENIC
SBS Chr5 16674768 G-A Hetero INTERGENIC
SBS Chr5 24098234 T-A Hetero INTERGENIC
SBS Chr5 28139513 C-T Hetero INTERGENIC
SBS Chr6 6925693 G-T Homo UTR_3_PRIME
SBS Chr6 15347347 A-G Homo INTERGENIC
SBS Chr7 1136746 A-G Homo INTERGENIC
SBS Chr7 15447327 C-T Homo INTERGENIC
SBS Chr7 15896382 T-C Hetero INTERGENIC
SBS Chr8 1645020 C-A Hetero INTERGENIC
SBS Chr8 18226074 C-T Hetero INTERGENIC
SBS Chr8 22850908 G-A Hetero INTERGENIC
SBS Chr9 11734395 T-C Hetero INTRON
SBS Chr9 15988109 T-G Hetero INTRON
SBS Chr9 16621155 G-A Hetero INTERGENIC
SBS Chr9 20168256 C-T Hetero INTERGENIC
SBS Chr9 20168257 C-T Hetero INTERGENIC
SBS Chr11 1731979 C-T Homo INTERGENIC
SBS Chr11 19270047 T-C Hetero INTRON
SBS Chr12 1280991 T-A Hetero INTRON
SBS Chr12 6185766 C-T Hetero INTERGENIC
SBS Chr12 9655925 C-T Homo INTERGENIC
SBS Chr12 17947095 C-T Hetero INTERGENIC
SBS Chr12 24468826 G-A Hetero INTERGENIC
SBS Chr12 24468827 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 132001 141000 8999
Deletion Chr8 3653229 3653239 10
Deletion Chr1 3865998 3866018 20
Deletion Chr2 8723601 8723614 13
Deletion Chr1 9235359 9235360 1
Deletion Chr11 9905340 9905341 1
Deletion Chr10 13623657 13623663 6
Deletion Chr9 14408820 14408822 2
Deletion Chr10 15241776 15241778 2
Deletion Chr4 19891587 19891636 49
Deletion Chr11 22426282 22426283 1
Deletion Chr8 23378612 23378613 1
Deletion Chr12 25501803 25501805 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 7890827 7890831 3
Insertion Chr8 5038135 5038137 1
Insertion Chr11 25036464 25036469 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1471281	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g018300
SBS	Chr1	13752278	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	14321617	C-T	Hetero	INTERGENIC
SBS	Chr1	16026524	C-T	Hetero	INTERGENIC
SBS	Chr1	33809584	T-C	Hetero	INTERGENIC
SBS	Chr2	1135121	T-C	Hetero	INTERGENIC
SBS	Chr2	3044986	T-A	Hetero	INTERGENIC
SBS	Chr2	17144763	C-T	Hetero	INTERGENIC
SBS	Chr2	20699023	T-C	Hetero	INTERGENIC
SBS	Chr2	25936269	G-A	Hetero	INTERGENIC
SBS	Chr3	6221257	T-C	Hetero	INTERGENIC
SBS	Chr3	9990901	T-C	Homo	INTERGENIC
SBS	Chr3	10916021	G-T	Homo	INTERGENIC
SBS	Chr3	12285875	C-T	Homo	INTERGENIC
SBS	Chr3	16415326	A-G	Hetero	INTERGENIC
SBS	Chr3	22507462	A-G	Hetero	INTERGENIC
SBS	Chr3	22600247	C-A	Hetero	INTERGENIC
SBS	Chr3	26369065	G-T	Hetero	INTERGENIC
SBS	Chr4	3682722	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g018100
SBS	Chr4	18761030	T-C	Hetero	INTERGENIC
SBS	Chr5	16633916	C-T	Hetero	INTERGENIC
SBS	Chr5	16674768	G-A	Hetero	INTERGENIC
SBS	Chr5	24098234	T-A	Hetero	INTERGENIC
SBS	Chr5	28139513	C-T	Hetero	INTERGENIC
SBS	Chr6	6925693	G-T	Homo	UTR_3_PRIME
SBS	Chr6	15347347	A-G	Homo	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	15447327	C-T	Homo	INTERGENIC
SBS	Chr7	15896382	T-C	Hetero	INTERGENIC
SBS	Chr8	1645020	C-A	Hetero	INTERGENIC
SBS	Chr8	18226074	C-T	Hetero	INTERGENIC
SBS	Chr8	22850908	G-A	Hetero	INTERGENIC
SBS	Chr9	11734395	T-C	Hetero	INTRON
SBS	Chr9	15988109	T-G	Hetero	INTRON
SBS	Chr9	16621155	G-A	Hetero	INTERGENIC
SBS	Chr9	20168256	C-T	Hetero	INTERGENIC
SBS	Chr9	20168257	C-T	Hetero	INTERGENIC
SBS	Chr11	1731979	C-T	Homo	INTERGENIC
SBS	Chr11	19270047	T-C	Hetero	INTRON
SBS	Chr12	1280991	T-A	Hetero	INTRON
SBS	Chr12	6185766	C-T	Hetero	INTERGENIC
SBS	Chr12	9655925	C-T	Homo	INTERGENIC
SBS	Chr12	17947095	C-T	Hetero	INTERGENIC
SBS	Chr12	24468826	G-A	Hetero	INTERGENIC
SBS	Chr12	24468827	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	132001	141000	8999
Deletion	Chr8	3653229	3653239	10
Deletion	Chr1	3865998	3866018	20
Deletion	Chr2	8723601	8723614	13
Deletion	Chr1	9235359	9235360	1
Deletion	Chr11	9905340	9905341	1
Deletion	Chr10	13623657	13623663	6
Deletion	Chr9	14408820	14408822	2
Deletion	Chr10	15241776	15241778	2
Deletion	Chr4	19891587	19891636	49
Deletion	Chr11	22426282	22426283	1
Deletion	Chr8	23378612	23378613	1
Deletion	Chr12	25501803	25501805	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes