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| Mutant Information |
|---|
| Mutant Name | FN3359-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3359-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5807347 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 23401298 | C-A | Homo | INTRON | |
| SBS | Chr2 | 4689117 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 30303805 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 32266121 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15263216 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g198000 |
| SBS | Chr3 | 18171223 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23511412 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29901875 | T-C | Homo | INTRON | |
| SBS | Chr3 | 34425196 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 10027741 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16373215 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 17784230 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 10529822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15496168 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24586405 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2011420 | G-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr8 | 14511571 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16657838 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17627106 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17627107 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 22426825 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2600696 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 7707566 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 11728774 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18734899 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7076595 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 17793210 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 7771329 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10275243 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10433076 | G-A | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 376772 | 376775 | 3 | OsKitaake05g005500 |
| Deletion | Chr5 | 6189392 | 6189412 | 20 | |
| Deletion | Chr11 | 6333776 | 6333784 | 8 | |
| Deletion | Chr6 | 6611634 | 6611635 | 1 | |
| Deletion | Chr4 | 10045469 | 10045479 | 10 | |
| Deletion | Chr5 | 14172285 | 14172290 | 5 | |
| Deletion | Chr6 | 15255368 | 15255384 | 16 | |
| Deletion | Chr2 | 17524505 | 17524510 | 5 | OsKitaake02g175900 |
| Deletion | Chr5 | 17784418 | 17784419 | 1 | |
| Deletion | Chr3 | 21355450 | 21355452 | 2 | |
| Deletion | Chr1 | 27918829 | 27918845 | 16 | |
| Deletion | Chr6 | 28703504 | 28703511 | 7 | OsKitaake06g264400 |
| Deletion | Chr2 | 30098501 | 30098510 | 9 | |
| Deletion | Chr2 | 31141001 | 31183000 | 41999 | 13 |
| Deletion | Chr2 | 31426383 | 31426389 | 6 | |
| Deletion | Chr1 | 36626400 | 36626402 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 13478406 | 13478410 | 3 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 11287316 | 11453223 | |
| Inversion | Chr12 | 11287320 | 11461708 | |
| Inversion | Chr1 | 11813762 | 12343210 | OsKitaake01g145600 |
| Inversion | Chr1 | 11813769 | 12343227 | OsKitaake01g145600 |
| Inversion | Chr4 | 18550250 | 18844281 | |
| Inversion | Chr4 | 18550267 | 18844286 |