Search Kitaake

Mutant Information

Mutant Name	FN3360-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3360-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6525270 T-C Homo INTERGENIC
SBS Chr1 8230204 T-C Hetero INTERGENIC
SBS Chr1 10387643 G-A Hetero UTR_3_PRIME
SBS Chr1 17776353 C-A Hetero INTERGENIC
SBS Chr1 22563870 G-A Hetero INTRON
SBS Chr1 24792787 T-A Hetero INTERGENIC
SBS Chr1 27521087 G-A Hetero INTERGENIC
SBS Chr1 31253951 G-T Hetero INTERGENIC
SBS Chr2 19563188 C-A Hetero INTERGENIC
SBS Chr2 24158686 C-T Hetero INTERGENIC
SBS Chr2 29853617 T-C Hetero INTERGENIC
SBS Chr3 5022983 G-A Homo INTERGENIC
SBS Chr3 6679633 G-A Homo INTERGENIC
SBS Chr3 12164751 T-G Hetero INTERGENIC
SBS Chr3 12258814 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g165500
SBS Chr3 15564533 T-G Hetero INTERGENIC
SBS Chr3 33836521 A-G Hetero INTRON
SBS Chr3 34074504 C-T Hetero INTERGENIC
SBS Chr4 12160695 C-G Hetero INTERGENIC
SBS Chr4 18252304 T-A Hetero INTERGENIC
SBS Chr4 19187145 C-T Hetero INTRON
SBS Chr4 23136881 T-G Homo INTERGENIC
SBS Chr5 8768506 T-C Hetero INTERGENIC
SBS Chr5 9029861 C-T Homo INTERGENIC
SBS Chr5 9754558 C-G Hetero INTERGENIC
SBS Chr5 11465640 C-G Hetero INTERGENIC
SBS Chr5 14219610 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g109000
SBS Chr5 15073906 G-A Hetero INTERGENIC
SBS Chr6 7280930 C-T Hetero INTERGENIC
SBS Chr6 9322635 A-G Homo INTERGENIC
SBS Chr6 20275196 G-T Hetero INTERGENIC
SBS Chr7 5031568 C-T Homo INTERGENIC
SBS Chr7 9832163 C-T Hetero INTERGENIC
SBS Chr7 20813932 C-T Hetero INTERGENIC
SBS Chr7 27502524 G-T Hetero INTERGENIC
SBS Chr8 6623182 G-A Hetero INTERGENIC
SBS Chr8 12054894 T-G Hetero INTERGENIC
SBS Chr8 14694713 T-G Hetero INTERGENIC
SBS Chr8 17160807 G-A Hetero INTERGENIC
SBS Chr9 11252302 G-T Hetero INTERGENIC
SBS Chr9 12395393 G-A Homo INTERGENIC
SBS Chr9 14000841 T-C Homo INTERGENIC
SBS Chr9 14273469 A-G Hetero INTRON
SBS Chr9 15531679 G-C Homo INTERGENIC
SBS Chr9 20312819 G-A Hetero INTERGENIC
SBS Chr10 750606 G-A Homo INTERGENIC
SBS Chr10 23706036 G-A Homo INTERGENIC
SBS Chr11 8436551 T-A Hetero UTR_5_PRIME
SBS Chr11 20528184 A-G Hetero INTERGENIC
SBS Chr11 24845836 C-T Hetero INTERGENIC
SBS Chr12 9971595 G-T Homo INTERGENIC
SBS Chr12 19100952 A-G Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 452533 452534 1
Deletion Chr12 1744555 1744556 1 OsKitaake12g026400
Deletion Chr10 2037491 2037493 2
Deletion Chr5 3714656 3714658 2
Deletion Chr9 4280472 4280473 1
Deletion Chr5 4308935 4308936 1
Deletion Chr1 6263685 6263687 2
Deletion Chr1 7784379 7784381 2
Deletion Chr3 7870923 7870924 1
Deletion Chr12 8382779 8382781 2
Deletion Chr7 11833406 11833407 1
Deletion Chr4 12574045 12574047 2
Deletion Chr1 18814040 18814042 2
Deletion Chr8 19776734 19776736 2
Deletion Chr11 20094342 20094343 1 OsKitaake11g157385
Deletion Chr3 22171289 22171291 2
Deletion Chr4 22629146 22629148 2
Deletion Chr1 26340982 26340983 1
Deletion Chr6 26611961 26611962 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8493493 8493496 2
Insertion Chr2 16616671 16616675 3
Insertion Chr6 17861161 17861164 2
Insertion Chr7 28157969 28157971 1
Insertion Chr11 23819680 23819684 3
Insertion Chr12 4947113 4947123 9
Insertion Chr12 7431112 7431116 3
Insertion Chr12 16857059 16857061 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 33172818 33683347 OsKitaake04g270200
Inversion Chr4 33172833 33683416 OsKitaake04g270200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6525270	T-C	Homo	INTERGENIC
SBS	Chr1	8230204	T-C	Hetero	INTERGENIC
SBS	Chr1	10387643	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	17776353	C-A	Hetero	INTERGENIC
SBS	Chr1	22563870	G-A	Hetero	INTRON
SBS	Chr1	24792787	T-A	Hetero	INTERGENIC
SBS	Chr1	27521087	G-A	Hetero	INTERGENIC
SBS	Chr1	31253951	G-T	Hetero	INTERGENIC
SBS	Chr2	19563188	C-A	Hetero	INTERGENIC
SBS	Chr2	24158686	C-T	Hetero	INTERGENIC
SBS	Chr2	29853617	T-C	Hetero	INTERGENIC
SBS	Chr3	5022983	G-A	Homo	INTERGENIC
SBS	Chr3	6679633	G-A	Homo	INTERGENIC
SBS	Chr3	12164751	T-G	Hetero	INTERGENIC
SBS	Chr3	12258814	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g165500
SBS	Chr3	15564533	T-G	Hetero	INTERGENIC
SBS	Chr3	33836521	A-G	Hetero	INTRON
SBS	Chr3	34074504	C-T	Hetero	INTERGENIC
SBS	Chr4	12160695	C-G	Hetero	INTERGENIC
SBS	Chr4	18252304	T-A	Hetero	INTERGENIC
SBS	Chr4	19187145	C-T	Hetero	INTRON
SBS	Chr4	23136881	T-G	Homo	INTERGENIC
SBS	Chr5	8768506	T-C	Hetero	INTERGENIC
SBS	Chr5	9029861	C-T	Homo	INTERGENIC
SBS	Chr5	9754558	C-G	Hetero	INTERGENIC
SBS	Chr5	11465640	C-G	Hetero	INTERGENIC
SBS	Chr5	14219610	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g109000
SBS	Chr5	15073906	G-A	Hetero	INTERGENIC
SBS	Chr6	7280930	C-T	Hetero	INTERGENIC
SBS	Chr6	9322635	A-G	Homo	INTERGENIC
SBS	Chr6	20275196	G-T	Hetero	INTERGENIC
SBS	Chr7	5031568	C-T	Homo	INTERGENIC
SBS	Chr7	9832163	C-T	Hetero	INTERGENIC
SBS	Chr7	20813932	C-T	Hetero	INTERGENIC
SBS	Chr7	27502524	G-T	Hetero	INTERGENIC
SBS	Chr8	6623182	G-A	Hetero	INTERGENIC
SBS	Chr8	12054894	T-G	Hetero	INTERGENIC
SBS	Chr8	14694713	T-G	Hetero	INTERGENIC
SBS	Chr8	17160807	G-A	Hetero	INTERGENIC
SBS	Chr9	11252302	G-T	Hetero	INTERGENIC
SBS	Chr9	12395393	G-A	Homo	INTERGENIC
SBS	Chr9	14000841	T-C	Homo	INTERGENIC
SBS	Chr9	14273469	A-G	Hetero	INTRON
SBS	Chr9	15531679	G-C	Homo	INTERGENIC
SBS	Chr9	20312819	G-A	Hetero	INTERGENIC
SBS	Chr10	750606	G-A	Homo	INTERGENIC
SBS	Chr10	23706036	G-A	Homo	INTERGENIC
SBS	Chr11	8436551	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	20528184	A-G	Hetero	INTERGENIC
SBS	Chr11	24845836	C-T	Hetero	INTERGENIC
SBS	Chr12	9971595	G-T	Homo	INTERGENIC
SBS	Chr12	19100952	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	452533	452534	1
Deletion	Chr12	1744555	1744556	1	OsKitaake12g026400
Deletion	Chr10	2037491	2037493	2
Deletion	Chr5	3714656	3714658	2
Deletion	Chr9	4280472	4280473	1
Deletion	Chr5	4308935	4308936	1
Deletion	Chr1	6263685	6263687	2
Deletion	Chr1	7784379	7784381	2
Deletion	Chr3	7870923	7870924	1
Deletion	Chr12	8382779	8382781	2
Deletion	Chr7	11833406	11833407	1
Deletion	Chr4	12574045	12574047	2
Deletion	Chr1	18814040	18814042	2
Deletion	Chr8	19776734	19776736	2
Deletion	Chr11	20094342	20094343	1	OsKitaake11g157385
Deletion	Chr3	22171289	22171291	2
Deletion	Chr4	22629146	22629148	2
Deletion	Chr1	26340982	26340983	1
Deletion	Chr6	26611961	26611962	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	33172818	33683347	OsKitaake04g270200
Inversion	Chr4	33172833	33683416	OsKitaake04g270200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes