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Mutant Information

Mutant Name	FN3362-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3362-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1776761 T-C Hetero INTERGENIC
SBS Chr1 2267880 G-A Hetero INTRON
SBS Chr1 4134388 T-C Hetero INTERGENIC
SBS Chr1 16362838 G-A Hetero INTERGENIC
SBS Chr1 23038280 C-T Hetero INTRON
SBS Chr1 40906002 G-A Hetero INTERGENIC
SBS Chr1 42174742 C-G Homo NON_SYNONYMOUS_CODING OsKitaake01g463600
SBS Chr2 5042451 G-A Hetero INTERGENIC
SBS Chr2 10580369 C-T Hetero INTERGENIC
SBS Chr2 13137514 A-T Hetero INTERGENIC
SBS Chr2 14902419 C-T Hetero INTERGENIC
SBS Chr2 26914780 T-C Hetero INTERGENIC
SBS Chr2 32655385 G-A Hetero INTRON
SBS Chr3 12672089 T-A Hetero INTRON
SBS Chr3 12672090 T-A Hetero INTRON
SBS Chr3 35308569 T-A Homo INTERGENIC
SBS Chr3 35308570 A-T Homo INTERGENIC
SBS Chr4 1802381 T-C Hetero INTERGENIC
SBS Chr4 2670563 G-C Hetero INTERGENIC
SBS Chr4 4449062 C-T Hetero INTERGENIC
SBS Chr4 9318772 G-T Hetero INTERGENIC
SBS Chr4 17894471 G-A Homo INTERGENIC
SBS Chr4 17894478 T-A Homo INTERGENIC
SBS Chr4 22500040 G-T Homo NON_SYNONYMOUS_CODING OsKitaake04g132800
SBS Chr4 33740260 T-C Hetero INTERGENIC
SBS Chr4 35341538 A-G Hetero UTR_5_PRIME
SBS Chr5 1054134 G-A Hetero INTERGENIC
SBS Chr5 5923492 T-C Hetero INTERGENIC
SBS Chr6 25770889 A-T Hetero INTERGENIC
SBS Chr6 27834376 G-A Hetero INTERGENIC
SBS Chr7 3802058 A-G Hetero INTERGENIC
SBS Chr7 3982243 C-A Homo INTERGENIC
SBS Chr7 14258897 C-T Homo INTRON
SBS Chr7 26370743 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g243100
SBS Chr8 16158864 G-A Hetero INTERGENIC
SBS Chr9 3692530 C-T Hetero INTERGENIC
SBS Chr9 22004085 C-T Hetero INTERGENIC
SBS Chr10 9100375 C-T Homo INTERGENIC
SBS Chr10 16925501 G-A Hetero UTR_5_PRIME
SBS Chr11 373824 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 28885288 C-G Hetero INTERGENIC
SBS Chr12 3802456 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g052600
SBS Chr12 10490109 C-T Hetero INTERGENIC
SBS Chr12 11316753 G-A Hetero INTERGENIC
SBS Chr12 16564030 C-T Hetero INTERGENIC
SBS Chr12 18128722 C-T Hetero INTERGENIC
SBS Chr12 25383914 T-A Hetero INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 784513 784537 24
Deletion Chr5 5995453 5995454 1
Deletion Chr2 7410001 7601000 190999 13
Deletion Chr9 8096328 8096332 4
Deletion Chr7 8360313 8360321 8
Deletion Chr8 13186940 13186943 3
Deletion Chr4 16119801 16119817 16
Deletion Chr11 16760061 16760062 1
Deletion Chr9 17162371 17162373 2
Deletion Chr2 19477744 19477748 4
Deletion Chr7 24563001 24577000 13999 2
Deletion Chr5 25228314 25228316 2
Deletion Chr12 26110304 26110310 6
Deletion Chr7 26811222 26811225 3 OsKitaake07g249900
Deletion Chr8 27304695 27304696 1
Deletion Chr3 30390367 30390368 1
Deletion Chr3 35406860 35406866 6
Deletion Chr3 36822202 36822208 6 OsKitaake03g411200

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 26480022 26480025 2
Insertion Chr5 12527862 12527864 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 11110481 11203717 OsKitaake09g069900
Inversion Chr9 11110484 11203720 OsKitaake09g069900
Inversion Chr9 20005504 20672033 OsKitaake09g167000
Inversion Chr9 20005514 20672040 OsKitaake09g167000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1776761	T-C	Hetero	INTERGENIC
SBS	Chr1	2267880	G-A	Hetero	INTRON
SBS	Chr1	4134388	T-C	Hetero	INTERGENIC
SBS	Chr1	16362838	G-A	Hetero	INTERGENIC
SBS	Chr1	23038280	C-T	Hetero	INTRON
SBS	Chr1	40906002	G-A	Hetero	INTERGENIC
SBS	Chr1	42174742	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g463600
SBS	Chr2	5042451	G-A	Hetero	INTERGENIC
SBS	Chr2	10580369	C-T	Hetero	INTERGENIC
SBS	Chr2	13137514	A-T	Hetero	INTERGENIC
SBS	Chr2	14902419	C-T	Hetero	INTERGENIC
SBS	Chr2	26914780	T-C	Hetero	INTERGENIC
SBS	Chr2	32655385	G-A	Hetero	INTRON
SBS	Chr3	12672089	T-A	Hetero	INTRON
SBS	Chr3	12672090	T-A	Hetero	INTRON
SBS	Chr3	35308569	T-A	Homo	INTERGENIC
SBS	Chr3	35308570	A-T	Homo	INTERGENIC
SBS	Chr4	1802381	T-C	Hetero	INTERGENIC
SBS	Chr4	2670563	G-C	Hetero	INTERGENIC
SBS	Chr4	4449062	C-T	Hetero	INTERGENIC
SBS	Chr4	9318772	G-T	Hetero	INTERGENIC
SBS	Chr4	17894471	G-A	Homo	INTERGENIC
SBS	Chr4	17894478	T-A	Homo	INTERGENIC
SBS	Chr4	22500040	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g132800
SBS	Chr4	33740260	T-C	Hetero	INTERGENIC
SBS	Chr4	35341538	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	1054134	G-A	Hetero	INTERGENIC
SBS	Chr5	5923492	T-C	Hetero	INTERGENIC
SBS	Chr6	25770889	A-T	Hetero	INTERGENIC
SBS	Chr6	27834376	G-A	Hetero	INTERGENIC
SBS	Chr7	3802058	A-G	Hetero	INTERGENIC
SBS	Chr7	3982243	C-A	Homo	INTERGENIC
SBS	Chr7	14258897	C-T	Homo	INTRON
SBS	Chr7	26370743	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g243100
SBS	Chr8	16158864	G-A	Hetero	INTERGENIC
SBS	Chr9	3692530	C-T	Hetero	INTERGENIC
SBS	Chr9	22004085	C-T	Hetero	INTERGENIC
SBS	Chr10	9100375	C-T	Homo	INTERGENIC
SBS	Chr10	16925501	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	373824	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	28885288	C-G	Hetero	INTERGENIC
SBS	Chr12	3802456	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g052600
SBS	Chr12	10490109	C-T	Hetero	INTERGENIC
SBS	Chr12	11316753	G-A	Hetero	INTERGENIC
SBS	Chr12	16564030	C-T	Hetero	INTERGENIC
SBS	Chr12	18128722	C-T	Hetero	INTERGENIC
SBS	Chr12	25383914	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	784513	784537	24
Deletion	Chr5	5995453	5995454	1
Deletion	Chr2	7410001	7601000	190999	13
Deletion	Chr9	8096328	8096332	4
Deletion	Chr7	8360313	8360321	8
Deletion	Chr8	13186940	13186943	3
Deletion	Chr4	16119801	16119817	16
Deletion	Chr11	16760061	16760062	1
Deletion	Chr9	17162371	17162373	2
Deletion	Chr2	19477744	19477748	4
Deletion	Chr7	24563001	24577000	13999	2
Deletion	Chr5	25228314	25228316	2
Deletion	Chr12	26110304	26110310	6
Deletion	Chr7	26811222	26811225	3	OsKitaake07g249900
Deletion	Chr8	27304695	27304696	1
Deletion	Chr3	30390367	30390368	1
Deletion	Chr3	35406860	35406866	6
Deletion	Chr3	36822202	36822208	6	OsKitaake03g411200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11110481	11203717	OsKitaake09g069900
Inversion	Chr9	11110484	11203720	OsKitaake09g069900
Inversion	Chr9	20005504	20672033	OsKitaake09g167000
Inversion	Chr9	20005514	20672040	OsKitaake09g167000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes