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Mutant Information

Mutant Name	FN3363-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3363-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3206884 G-A Hetero INTERGENIC
SBS Chr1 11936745 C-T Hetero INTERGENIC
SBS Chr1 28816885 A-C Hetero INTERGENIC
SBS Chr2 12609510 G-A Hetero INTRON
SBS Chr2 24075956 T-A Homo INTRON
SBS Chr3 11061103 G-A Hetero INTERGENIC
SBS Chr3 19224809 C-T Hetero INTERGENIC
SBS Chr4 2178208 C-T Hetero INTERGENIC
SBS Chr4 10782956 C-T Hetero INTERGENIC
SBS Chr4 18923235 C-A Hetero UTR_3_PRIME
SBS Chr4 18923236 A-G Hetero UTR_3_PRIME
SBS Chr4 20970154 G-T Homo INTERGENIC
SBS Chr4 29128272 G-A Hetero INTERGENIC
SBS Chr4 32357496 G-T Hetero INTERGENIC
SBS Chr4 35951786 T-A Homo INTERGENIC
SBS Chr4 36613699 G-A Hetero INTERGENIC
SBS Chr5 2793422 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g032100
SBS Chr5 6355205 A-T Homo INTERGENIC
SBS Chr5 27212573 A-T Homo INTERGENIC
SBS Chr6 18014696 G-T Hetero INTRON
SBS Chr6 29310010 A-T Homo INTERGENIC
SBS Chr7 6420508 C-T Hetero INTERGENIC
SBS Chr7 6772903 C-T Hetero INTERGENIC
SBS Chr7 9584778 T-C Hetero INTERGENIC
SBS Chr7 10592287 T-G Hetero INTERGENIC
SBS Chr8 5567458 G-T Hetero INTERGENIC
SBS Chr8 5567459 A-T Hetero INTERGENIC
SBS Chr8 17672611 G-T Hetero INTERGENIC
SBS Chr8 25952001 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g206300
SBS Chr8 27854671 C-T Hetero INTERGENIC
SBS Chr9 20790869 G-C Homo INTERGENIC
SBS Chr10 2034420 G-A Hetero INTERGENIC
SBS Chr10 19328495 A-C Homo INTERGENIC
SBS Chr10 23263387 C-T Homo INTERGENIC
SBS Chr11 11482709 C-G Hetero INTERGENIC
SBS Chr11 15446001 G-T Homo INTERGENIC
SBS Chr11 19307551 G-A Hetero INTERGENIC
SBS Chr11 29397609 A-C Homo INTERGENIC
SBS Chr12 6253455 T-C Hetero INTERGENIC
SBS Chr12 7754287 C-A Hetero INTERGENIC
SBS Chr12 7775981 C-G Hetero INTRON
SBS Chr12 24555643 G-T Hetero INTRON

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1385316 1385321 5
Deletion Chr4 2282001 2630000 347999 10
Deletion Chr4 2632001 2690000 57999 OsKitaake04g015800
Deletion Chr12 3714841 3714842 1
Deletion Chr6 4759648 4759653 5
Deletion Chr2 4984968 4984970 2 OsKitaake02g069300
Deletion Chr8 5567736 5567752 16
Deletion Chr3 6767438 6767439 1
Deletion Chr6 8113311 8113318 7
Deletion Chr2 9649878 9649883 5
Deletion Chr7 11074797 11074805 8
Deletion Chr12 12429663 12429669 6
Deletion Chr1 13061497 13061505 8
Deletion Chr2 15409939 15409942 3
Deletion Chr3 18179709 18179711 2
Deletion Chr11 21924067 21924077 10
Deletion Chr2 24272979 24272982 3
Deletion Chr2 24500001 24517000 16999
Deletion Chr4 31555154 31555165 11 OsKitaake04g248400
Deletion Chr1 43054001 43202000 147999 20

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr5 13830068 13830071 2
Insertion Chr7 2861759 2861762 2
Insertion Chr11 4030508 4030511 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 4174828 4680558 OsKitaake02g064600
Inversion Chr2 4174832 4680559 OsKitaake02g064600
Inversion Chr12 14670055 14798165 OsKitaake12g117500
Inversion Chr12 14670231 14798170 OsKitaake12g117500
Inversion Chr2 24500285 24517386
Inversion Chr2 24517275 24517542

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 14902895 Chr2 35717015

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3206884	G-A	Hetero	INTERGENIC
SBS	Chr1	11936745	C-T	Hetero	INTERGENIC
SBS	Chr1	28816885	A-C	Hetero	INTERGENIC
SBS	Chr2	12609510	G-A	Hetero	INTRON
SBS	Chr2	24075956	T-A	Homo	INTRON
SBS	Chr3	11061103	G-A	Hetero	INTERGENIC
SBS	Chr3	19224809	C-T	Hetero	INTERGENIC
SBS	Chr4	2178208	C-T	Hetero	INTERGENIC
SBS	Chr4	10782956	C-T	Hetero	INTERGENIC
SBS	Chr4	18923235	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	18923236	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr4	29128272	G-A	Hetero	INTERGENIC
SBS	Chr4	32357496	G-T	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Homo	INTERGENIC
SBS	Chr4	36613699	G-A	Hetero	INTERGENIC
SBS	Chr5	2793422	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g032100
SBS	Chr5	6355205	A-T	Homo	INTERGENIC
SBS	Chr5	27212573	A-T	Homo	INTERGENIC
SBS	Chr6	18014696	G-T	Hetero	INTRON
SBS	Chr6	29310010	A-T	Homo	INTERGENIC
SBS	Chr7	6420508	C-T	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Hetero	INTERGENIC
SBS	Chr7	9584778	T-C	Hetero	INTERGENIC
SBS	Chr7	10592287	T-G	Hetero	INTERGENIC
SBS	Chr8	5567458	G-T	Hetero	INTERGENIC
SBS	Chr8	5567459	A-T	Hetero	INTERGENIC
SBS	Chr8	17672611	G-T	Hetero	INTERGENIC
SBS	Chr8	25952001	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g206300
SBS	Chr8	27854671	C-T	Hetero	INTERGENIC
SBS	Chr9	20790869	G-C	Homo	INTERGENIC
SBS	Chr10	2034420	G-A	Hetero	INTERGENIC
SBS	Chr10	19328495	A-C	Homo	INTERGENIC
SBS	Chr10	23263387	C-T	Homo	INTERGENIC
SBS	Chr11	11482709	C-G	Hetero	INTERGENIC
SBS	Chr11	15446001	G-T	Homo	INTERGENIC
SBS	Chr11	19307551	G-A	Hetero	INTERGENIC
SBS	Chr11	29397609	A-C	Homo	INTERGENIC
SBS	Chr12	6253455	T-C	Hetero	INTERGENIC
SBS	Chr12	7754287	C-A	Hetero	INTERGENIC
SBS	Chr12	7775981	C-G	Hetero	INTRON
SBS	Chr12	24555643	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1385316	1385321	5
Deletion	Chr4	2282001	2630000	347999	10
Deletion	Chr4	2632001	2690000	57999	OsKitaake04g015800
Deletion	Chr12	3714841	3714842	1
Deletion	Chr6	4759648	4759653	5
Deletion	Chr2	4984968	4984970	2	OsKitaake02g069300
Deletion	Chr8	5567736	5567752	16
Deletion	Chr3	6767438	6767439	1
Deletion	Chr6	8113311	8113318	7
Deletion	Chr2	9649878	9649883	5
Deletion	Chr7	11074797	11074805	8
Deletion	Chr12	12429663	12429669	6
Deletion	Chr1	13061497	13061505	8
Deletion	Chr2	15409939	15409942	3
Deletion	Chr3	18179709	18179711	2
Deletion	Chr11	21924067	21924077	10
Deletion	Chr2	24272979	24272982	3
Deletion	Chr2	24500001	24517000	16999
Deletion	Chr4	31555154	31555165	11	OsKitaake04g248400
Deletion	Chr1	43054001	43202000	147999	20

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4174828	4680558	OsKitaake02g064600
Inversion	Chr2	4174832	4680559	OsKitaake02g064600
Inversion	Chr12	14670055	14798165	OsKitaake12g117500
Inversion	Chr12	14670231	14798170	OsKitaake12g117500
Inversion	Chr2	24500285	24517386
Inversion	Chr2	24517275	24517542

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes