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Mutant Information

Mutant Name	FN3364-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3364-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 844869 C-T Hetero INTERGENIC
SBS Chr1 1402273 C-G Hetero INTERGENIC
SBS Chr1 19921318 A-G Homo INTERGENIC
SBS Chr1 35616829 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g377000
SBS Chr1 36684810 C-T Homo INTERGENIC
SBS Chr1 37367704 T-A Hetero INTRON
SBS Chr1 37367705 C-T Hetero INTRON
SBS Chr1 41721886 T-C Hetero INTERGENIC
SBS Chr2 6710145 T-A Hetero INTERGENIC
SBS Chr2 8177787 A-T Hetero INTERGENIC
SBS Chr2 26077561 A-T Homo INTERGENIC
SBS Chr2 31653865 C-T Hetero INTERGENIC
SBS Chr3 5427167 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g076800
SBS Chr3 7355757 C-T Hetero INTERGENIC
SBS Chr3 30571197 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g321200
SBS Chr4 7549984 G-A Hetero INTERGENIC
SBS Chr5 8710534 T-C Hetero INTRON
SBS Chr5 12349943 A-G Hetero INTERGENIC
SBS Chr5 20929579 T-C Hetero UTR_3_PRIME
SBS Chr5 20933466 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 21188732 G-A Hetero INTERGENIC
SBS Chr5 29179710 G-A Homo INTERGENIC
SBS Chr5 29794365 G-A Homo INTERGENIC
SBS Chr6 345084 C-T Hetero INTERGENIC
SBS Chr6 8490724 G-A Hetero INTERGENIC
SBS Chr6 11376437 C-T Homo INTERGENIC
SBS Chr6 13704146 C-T Hetero INTERGENIC
SBS Chr6 20947388 G-A Hetero INTERGENIC
SBS Chr6 26251711 G-A Hetero INTERGENIC
SBS Chr6 29227614 T-A Hetero INTERGENIC
SBS Chr7 648801 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g007600
SBS Chr7 3899153 T-A Homo INTERGENIC
SBS Chr7 19145923 G-T Hetero INTERGENIC
SBS Chr7 21468884 A-G Hetero INTRON
SBS Chr7 22364998 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 22837800 A-C Hetero INTERGENIC
SBS Chr7 23982523 C-A Hetero INTERGENIC
SBS Chr8 7110404 G-A Homo INTERGENIC
SBS Chr8 14880594 A-G Hetero INTERGENIC
SBS Chr9 18992382 C-T Hetero INTERGENIC
SBS Chr10 21910 C-T Hetero INTERGENIC
SBS Chr10 6799579 G-T Hetero INTERGENIC
SBS Chr10 10315343 C-T Hetero INTERGENIC
SBS Chr11 15428231 C-T Hetero INTERGENIC
SBS Chr11 21826022 C-T Hetero INTERGENIC
SBS Chr12 6822258 G-A Homo INTERGENIC
SBS Chr12 25009302 G-A Homo INTERGENIC
SBS Chr12 26799696 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 466001 572000 105999 18
Deletion Chr10 2436001 2476000 39999 OsKitaake10g019600
Deletion Chr1 5574571 5574572 1
Deletion Chr4 6963438 6963445 7
Deletion Chr3 8372588 8372594 6
Deletion Chr6 11375682 11375693 11
Deletion Chr3 14470218 14470221 3
Deletion Chr4 15710449 15710462 13
Deletion Chr2 16170872 16170874 2
Deletion Chr3 16694826 16694835 9
Deletion Chr3 17793300 17793307 7
Deletion Chr1 18337192 18337199 7
Deletion Chr3 19307124 19307125 1
Deletion Chr9 22128332 22128342 10 OsKitaake09g199200
Deletion Chr9 22512027 22512036 9
Deletion Chr3 24377250 24377253 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11405891 11405894 2
Insertion Chr4 7072910 7072912 1
Insertion Chr4 24512831 24512834 2
Insertion Chr11 8577587 8577590 2
Insertion Chr11 18576873 18576876 2
Insertion Chr12 11211139 11211141 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 2475995 2634869 OsKitaake10g021200
Inversion Chr6 4203629 4572509 OsKitaake06g058200
Inversion Chr6 4203640 4572512 OsKitaake06g058200
Inversion Chr9 9338604 9631784 2
Inversion Chr8 28175933 28416824 OsKitaake08g240400
Inversion Chr8 28175963 28416832 OsKitaake08g240400
Inversion Chr8 28991234 29073559 OsKitaake08g250800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 12939466 Chr1 915167

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	844869	C-T	Hetero	INTERGENIC
SBS	Chr1	1402273	C-G	Hetero	INTERGENIC
SBS	Chr1	19921318	A-G	Homo	INTERGENIC
SBS	Chr1	35616829	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g377000
SBS	Chr1	36684810	C-T	Homo	INTERGENIC
SBS	Chr1	37367704	T-A	Hetero	INTRON
SBS	Chr1	37367705	C-T	Hetero	INTRON
SBS	Chr1	41721886	T-C	Hetero	INTERGENIC
SBS	Chr2	6710145	T-A	Hetero	INTERGENIC
SBS	Chr2	8177787	A-T	Hetero	INTERGENIC
SBS	Chr2	26077561	A-T	Homo	INTERGENIC
SBS	Chr2	31653865	C-T	Hetero	INTERGENIC
SBS	Chr3	5427167	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g076800
SBS	Chr3	7355757	C-T	Hetero	INTERGENIC
SBS	Chr3	30571197	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g321200
SBS	Chr4	7549984	G-A	Hetero	INTERGENIC
SBS	Chr5	8710534	T-C	Hetero	INTRON
SBS	Chr5	12349943	A-G	Hetero	INTERGENIC
SBS	Chr5	20929579	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	20933466	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	21188732	G-A	Hetero	INTERGENIC
SBS	Chr5	29179710	G-A	Homo	INTERGENIC
SBS	Chr5	29794365	G-A	Homo	INTERGENIC
SBS	Chr6	345084	C-T	Hetero	INTERGENIC
SBS	Chr6	8490724	G-A	Hetero	INTERGENIC
SBS	Chr6	11376437	C-T	Homo	INTERGENIC
SBS	Chr6	13704146	C-T	Hetero	INTERGENIC
SBS	Chr6	20947388	G-A	Hetero	INTERGENIC
SBS	Chr6	26251711	G-A	Hetero	INTERGENIC
SBS	Chr6	29227614	T-A	Hetero	INTERGENIC
SBS	Chr7	648801	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g007600
SBS	Chr7	3899153	T-A	Homo	INTERGENIC
SBS	Chr7	19145923	G-T	Hetero	INTERGENIC
SBS	Chr7	21468884	A-G	Hetero	INTRON
SBS	Chr7	22364998	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	22837800	A-C	Hetero	INTERGENIC
SBS	Chr7	23982523	C-A	Hetero	INTERGENIC
SBS	Chr8	7110404	G-A	Homo	INTERGENIC
SBS	Chr8	14880594	A-G	Hetero	INTERGENIC
SBS	Chr9	18992382	C-T	Hetero	INTERGENIC
SBS	Chr10	21910	C-T	Hetero	INTERGENIC
SBS	Chr10	6799579	G-T	Hetero	INTERGENIC
SBS	Chr10	10315343	C-T	Hetero	INTERGENIC
SBS	Chr11	15428231	C-T	Hetero	INTERGENIC
SBS	Chr11	21826022	C-T	Hetero	INTERGENIC
SBS	Chr12	6822258	G-A	Homo	INTERGENIC
SBS	Chr12	25009302	G-A	Homo	INTERGENIC
SBS	Chr12	26799696	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	466001	572000	105999	18
Deletion	Chr10	2436001	2476000	39999	OsKitaake10g019600
Deletion	Chr1	5574571	5574572	1
Deletion	Chr4	6963438	6963445	7
Deletion	Chr3	8372588	8372594	6
Deletion	Chr6	11375682	11375693	11
Deletion	Chr3	14470218	14470221	3
Deletion	Chr4	15710449	15710462	13
Deletion	Chr2	16170872	16170874	2
Deletion	Chr3	16694826	16694835	9
Deletion	Chr3	17793300	17793307	7
Deletion	Chr1	18337192	18337199	7
Deletion	Chr3	19307124	19307125	1
Deletion	Chr9	22128332	22128342	10	OsKitaake09g199200
Deletion	Chr9	22512027	22512036	9
Deletion	Chr3	24377250	24377253	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2475995	2634869	OsKitaake10g021200
Inversion	Chr6	4203629	4572509	OsKitaake06g058200
Inversion	Chr6	4203640	4572512	OsKitaake06g058200
Inversion	Chr9	9338604	9631784	2
Inversion	Chr8	28175933	28416824	OsKitaake08g240400
Inversion	Chr8	28175963	28416832	OsKitaake08g240400
Inversion	Chr8	28991234	29073559	OsKitaake08g250800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes