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Mutant Information

Mutant Name	FN3365-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3365-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1277778 C-A Homo INTERGENIC
SBS Chr1 16019528 G-T Hetero INTERGENIC
SBS Chr1 17773924 C-T Hetero INTERGENIC
SBS Chr1 34060200 G-T Homo INTERGENIC
SBS Chr1 35125705 G-T Homo INTERGENIC
SBS Chr2 35421954 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g371600
SBS Chr2 35421955 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g371600
SBS Chr3 7036307 G-C Hetero INTERGENIC
SBS Chr3 15286937 A-C Homo INTERGENIC
SBS Chr3 17988348 T-A Homo INTERGENIC
SBS Chr4 7490009 C-T Hetero INTERGENIC
SBS Chr4 7545030 G-A Hetero INTERGENIC
SBS Chr4 30622522 C-T Hetero UTR_5_PRIME
SBS Chr6 6226419 C-T Homo INTERGENIC
SBS Chr7 7963336 T-C Hetero INTERGENIC
SBS Chr7 27205805 C-A Homo INTERGENIC
SBS Chr11 5181064 C-T Hetero INTERGENIC
SBS Chr11 5181067 G-T Hetero INTERGENIC
SBS Chr11 21404672 G-A Hetero INTERGENIC
SBS Chr11 22428798 A-C Homo INTERGENIC
SBS Chr11 22428801 A-T Homo INTERGENIC
SBS Chr12 1371505 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g020200
SBS Chr12 14716813 A-T Hetero INTERGENIC
SBS Chr12 23023015 G-A Hetero INTERGENIC
SBS Chr12 24616054 C-G Hetero INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 233385 233400 15
Deletion Chr10 2202862 2202867 5
Deletion Chr2 5539783 5539784 1
Deletion Chr1 9948959 9948961 2
Deletion Chr8 10881724 10881726 2
Deletion Chr7 11107949 11107971 22
Deletion Chr5 11280787 11280788 1
Deletion Chr4 16244841 16244842 1
Deletion Chr1 17617118 17617134 16
Deletion Chr11 19827001 20257000 429999 33
Deletion Chr5 20734746 20734763 17
Deletion Chr3 23921996 23921999 3
Deletion Chr3 24570598 24570604 6
Deletion Chr12 24674989 24674996 7
Deletion Chr11 26367001 26842000 474999 44
Deletion Chr12 26908329 26908332 3
Deletion Chr7 28183916 28183920 4
Deletion Chr1 28852668 28852680 12

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1385631 1385634 2
Insertion Chr7 24309705 24309708 2
Insertion Chr10 3469236 3469239 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 20253658 20682357 OsKitaake11g162301
Inversion Chr11 20366148 20680873 OsKitaake11g162301
Inversion Chr11 22384238 22468535

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 24696285 Chr11 5931951 OsKitaake11g072200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1277778	C-A	Homo	INTERGENIC
SBS	Chr1	16019528	G-T	Hetero	INTERGENIC
SBS	Chr1	17773924	C-T	Hetero	INTERGENIC
SBS	Chr1	34060200	G-T	Homo	INTERGENIC
SBS	Chr1	35125705	G-T	Homo	INTERGENIC
SBS	Chr2	35421954	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g371600
SBS	Chr2	35421955	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g371600
SBS	Chr3	7036307	G-C	Hetero	INTERGENIC
SBS	Chr3	15286937	A-C	Homo	INTERGENIC
SBS	Chr3	17988348	T-A	Homo	INTERGENIC
SBS	Chr4	7490009	C-T	Hetero	INTERGENIC
SBS	Chr4	7545030	G-A	Hetero	INTERGENIC
SBS	Chr4	30622522	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	6226419	C-T	Homo	INTERGENIC
SBS	Chr7	7963336	T-C	Hetero	INTERGENIC
SBS	Chr7	27205805	C-A	Homo	INTERGENIC
SBS	Chr11	5181064	C-T	Hetero	INTERGENIC
SBS	Chr11	5181067	G-T	Hetero	INTERGENIC
SBS	Chr11	21404672	G-A	Hetero	INTERGENIC
SBS	Chr11	22428798	A-C	Homo	INTERGENIC
SBS	Chr11	22428801	A-T	Homo	INTERGENIC
SBS	Chr12	1371505	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g020200
SBS	Chr12	14716813	A-T	Hetero	INTERGENIC
SBS	Chr12	23023015	G-A	Hetero	INTERGENIC
SBS	Chr12	24616054	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	233385	233400	15
Deletion	Chr10	2202862	2202867	5
Deletion	Chr2	5539783	5539784	1
Deletion	Chr1	9948959	9948961	2
Deletion	Chr8	10881724	10881726	2
Deletion	Chr7	11107949	11107971	22
Deletion	Chr5	11280787	11280788	1
Deletion	Chr4	16244841	16244842	1
Deletion	Chr1	17617118	17617134	16
Deletion	Chr11	19827001	20257000	429999	33
Deletion	Chr5	20734746	20734763	17
Deletion	Chr3	23921996	23921999	3
Deletion	Chr3	24570598	24570604	6
Deletion	Chr12	24674989	24674996	7
Deletion	Chr11	26367001	26842000	474999	44
Deletion	Chr12	26908329	26908332	3
Deletion	Chr7	28183916	28183920	4
Deletion	Chr1	28852668	28852680	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	20253658	20682357	OsKitaake11g162301
Inversion	Chr11	20366148	20680873	OsKitaake11g162301
Inversion	Chr11	22384238	22468535

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes