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Mutant Information

Mutant Name	FN3366-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3366-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 70

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 980080 C-T Hetero INTRON
SBS Chr1 18511540 A-G Homo INTERGENIC
SBS Chr1 33146337 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g338300
SBS Chr1 35556289 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g376200
SBS Chr1 40300541 C-A Hetero INTERGENIC
SBS Chr2 6149580 G-C Homo INTERGENIC
SBS Chr2 8687921 A-G Hetero INTRON
SBS Chr2 10745298 C-A Hetero INTERGENIC
SBS Chr2 13156062 G-A Hetero INTERGENIC
SBS Chr2 32931522 C-G Hetero INTRON
SBS Chr3 1542305 C-T Hetero INTERGENIC
SBS Chr3 6356814 A-T Hetero INTERGENIC
SBS Chr3 22171261 G-A Hetero INTRON
SBS Chr3 22171262 C-G Hetero INTRON
SBS Chr3 24767480 C-A Hetero INTERGENIC
SBS Chr3 25911314 A-T Hetero INTERGENIC
SBS Chr3 28744422 G-A Hetero INTERGENIC
SBS Chr4 5570406 G-A Hetero INTERGENIC
SBS Chr4 6108349 G-T Hetero INTERGENIC
SBS Chr4 15305294 C-T Hetero INTERGENIC
SBS Chr4 19697829 G-A Hetero INTERGENIC
SBS Chr4 24434074 C-A Hetero INTERGENIC
SBS Chr4 27211034 C-T Hetero INTERGENIC
SBS Chr5 545111 G-A Hetero INTERGENIC
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr5 10423887 A-T Hetero INTERGENIC
SBS Chr5 22466889 C-T Hetero INTERGENIC
SBS Chr5 23122784 A-T Hetero INTRON
SBS Chr5 23122785 A-T Hetero INTRON
SBS Chr6 2322284 T-G Hetero INTRON
SBS Chr6 2322285 A-T Hetero INTRON
SBS Chr6 4211718 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g058300
SBS Chr6 5908444 G-A Hetero INTERGENIC
SBS Chr6 5959921 A-T Hetero INTERGENIC
SBS Chr6 19374379 G-A Hetero INTERGENIC
SBS Chr6 30653417 T-G Hetero INTERGENIC
SBS Chr7 200198 G-A Hetero INTERGENIC
SBS Chr7 13955854 G-A Hetero INTERGENIC
SBS Chr7 18760947 T-A Homo INTERGENIC
SBS Chr8 288344 A-G Hetero INTERGENIC
SBS Chr8 4060065 G-A Hetero INTERGENIC
SBS Chr8 8790348 T-A Homo INTERGENIC
SBS Chr8 12275675 C-T Hetero INTERGENIC
SBS Chr8 13805276 G-T Hetero INTERGENIC
SBS Chr8 24426737 C-T Homo INTERGENIC
SBS Chr9 1525075 C-T Homo INTERGENIC
SBS Chr9 3198430 G-A Hetero INTERGENIC
SBS Chr9 7922319 T-C Homo INTERGENIC
SBS Chr9 8749335 C-T Hetero INTERGENIC
SBS Chr9 12205182 C-T Hetero INTERGENIC
SBS Chr10 5891353 A-G Hetero INTERGENIC
SBS Chr10 8673610 G-C Hetero INTERGENIC
SBS Chr10 9937640 A-G Hetero INTERGENIC
SBS Chr10 12203321 G-A Hetero INTERGENIC
SBS Chr10 18177202 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g128400
SBS Chr11 214697 C-A Hetero INTERGENIC
SBS Chr11 5183250 C-A Hetero INTERGENIC
SBS Chr11 5183251 C-A Hetero INTERGENIC
SBS Chr11 9513052 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr11 17071321 A-G Hetero INTRON
SBS Chr11 17547352 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g137500
SBS Chr11 18426799 A-G Homo INTERGENIC
SBS Chr11 20376105 G-A Homo INTERGENIC
SBS Chr11 23844356 C-T Hetero INTERGENIC
SBS Chr12 3895224 A-G Hetero INTERGENIC
SBS Chr12 4001330 C-T Hetero INTERGENIC
SBS Chr12 4444406 C-T Hetero INTERGENIC
SBS Chr12 15185736 T-G Hetero INTERGENIC
SBS Chr12 24435198 C-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2606322 2606324 2 OsKitaake03g036900
Deletion Chr6 4587453 4587460 7
Deletion Chr7 4606022 4606025 3
Deletion Chr12 6674955 6674957 2
Deletion Chr5 8718518 8718519 1
Deletion Chr3 9864959 9864964 5 OsKitaake03g134800
Deletion Chr10 9871470 9871478 8
Deletion Chr7 11237152 11237166 14
Deletion Chr7 12087073 12087086 13
Deletion Chr5 16500099 16500116 17
Deletion Chr7 20631523 20631524 1
Deletion Chr2 23371308 23371309 1
Deletion Chr2 25594520 25594523 3
Deletion Chr1 26039888 26039889 1
Deletion Chr7 29160339 29160343 4 OsKitaake07g278900
Deletion Chr2 34237816 34237817 1
Deletion Chr1 39495443 39495444 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9643192 9643198 5
Insertion Chr1 10975182 10975185 2
Insertion Chr1 38734287 38734292 4
Insertion Chr2 12526801 12526804 2
Insertion Chr3 8651741 8651744 2
Insertion Chr6 49087 49089 1
Insertion Chr6 20271431 20271435 3
Insertion Chr7 8701077 8701080 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 17014049 17082109
Inversion Chr3 17014068 17082115

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3942467 Chr4 7597248 OsKitaake12g053800
Translocation Chr12 3942483 Chr4 6485486 OsKitaake12g053800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	980080	C-T	Hetero	INTRON
SBS	Chr1	18511540	A-G	Homo	INTERGENIC
SBS	Chr1	33146337	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g338300
SBS	Chr1	35556289	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g376200
SBS	Chr1	40300541	C-A	Hetero	INTERGENIC
SBS	Chr2	6149580	G-C	Homo	INTERGENIC
SBS	Chr2	8687921	A-G	Hetero	INTRON
SBS	Chr2	10745298	C-A	Hetero	INTERGENIC
SBS	Chr2	13156062	G-A	Hetero	INTERGENIC
SBS	Chr2	32931522	C-G	Hetero	INTRON
SBS	Chr3	1542305	C-T	Hetero	INTERGENIC
SBS	Chr3	6356814	A-T	Hetero	INTERGENIC
SBS	Chr3	22171261	G-A	Hetero	INTRON
SBS	Chr3	22171262	C-G	Hetero	INTRON
SBS	Chr3	24767480	C-A	Hetero	INTERGENIC
SBS	Chr3	25911314	A-T	Hetero	INTERGENIC
SBS	Chr3	28744422	G-A	Hetero	INTERGENIC
SBS	Chr4	5570406	G-A	Hetero	INTERGENIC
SBS	Chr4	6108349	G-T	Hetero	INTERGENIC
SBS	Chr4	15305294	C-T	Hetero	INTERGENIC
SBS	Chr4	19697829	G-A	Hetero	INTERGENIC
SBS	Chr4	24434074	C-A	Hetero	INTERGENIC
SBS	Chr4	27211034	C-T	Hetero	INTERGENIC
SBS	Chr5	545111	G-A	Hetero	INTERGENIC
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr5	10423887	A-T	Hetero	INTERGENIC
SBS	Chr5	22466889	C-T	Hetero	INTERGENIC
SBS	Chr5	23122784	A-T	Hetero	INTRON
SBS	Chr5	23122785	A-T	Hetero	INTRON
SBS	Chr6	2322284	T-G	Hetero	INTRON
SBS	Chr6	2322285	A-T	Hetero	INTRON
SBS	Chr6	4211718	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g058300
SBS	Chr6	5908444	G-A	Hetero	INTERGENIC
SBS	Chr6	5959921	A-T	Hetero	INTERGENIC
SBS	Chr6	19374379	G-A	Hetero	INTERGENIC
SBS	Chr6	30653417	T-G	Hetero	INTERGENIC
SBS	Chr7	200198	G-A	Hetero	INTERGENIC
SBS	Chr7	13955854	G-A	Hetero	INTERGENIC
SBS	Chr7	18760947	T-A	Homo	INTERGENIC
SBS	Chr8	288344	A-G	Hetero	INTERGENIC
SBS	Chr8	4060065	G-A	Hetero	INTERGENIC
SBS	Chr8	8790348	T-A	Homo	INTERGENIC
SBS	Chr8	12275675	C-T	Hetero	INTERGENIC
SBS	Chr8	13805276	G-T	Hetero	INTERGENIC
SBS	Chr8	24426737	C-T	Homo	INTERGENIC
SBS	Chr9	1525075	C-T	Homo	INTERGENIC
SBS	Chr9	3198430	G-A	Hetero	INTERGENIC
SBS	Chr9	7922319	T-C	Homo	INTERGENIC
SBS	Chr9	8749335	C-T	Hetero	INTERGENIC
SBS	Chr9	12205182	C-T	Hetero	INTERGENIC
SBS	Chr10	5891353	A-G	Hetero	INTERGENIC
SBS	Chr10	8673610	G-C	Hetero	INTERGENIC
SBS	Chr10	9937640	A-G	Hetero	INTERGENIC
SBS	Chr10	12203321	G-A	Hetero	INTERGENIC
SBS	Chr10	18177202	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g128400
SBS	Chr11	214697	C-A	Hetero	INTERGENIC
SBS	Chr11	5183250	C-A	Hetero	INTERGENIC
SBS	Chr11	5183251	C-A	Hetero	INTERGENIC
SBS	Chr11	9513052	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr11	17071321	A-G	Hetero	INTRON
SBS	Chr11	17547352	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g137500
SBS	Chr11	18426799	A-G	Homo	INTERGENIC
SBS	Chr11	20376105	G-A	Homo	INTERGENIC
SBS	Chr11	23844356	C-T	Hetero	INTERGENIC
SBS	Chr12	3895224	A-G	Hetero	INTERGENIC
SBS	Chr12	4001330	C-T	Hetero	INTERGENIC
SBS	Chr12	4444406	C-T	Hetero	INTERGENIC
SBS	Chr12	15185736	T-G	Hetero	INTERGENIC
SBS	Chr12	24435198	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2606322	2606324	2	OsKitaake03g036900
Deletion	Chr6	4587453	4587460	7
Deletion	Chr7	4606022	4606025	3
Deletion	Chr12	6674955	6674957	2
Deletion	Chr5	8718518	8718519	1
Deletion	Chr3	9864959	9864964	5	OsKitaake03g134800
Deletion	Chr10	9871470	9871478	8
Deletion	Chr7	11237152	11237166	14
Deletion	Chr7	12087073	12087086	13
Deletion	Chr5	16500099	16500116	17
Deletion	Chr7	20631523	20631524	1
Deletion	Chr2	23371308	23371309	1
Deletion	Chr2	25594520	25594523	3
Deletion	Chr1	26039888	26039889	1
Deletion	Chr7	29160339	29160343	4	OsKitaake07g278900
Deletion	Chr2	34237816	34237817	1
Deletion	Chr1	39495443	39495444	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	17014049	17082109
Inversion	Chr3	17014068	17082115

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes