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Mutant Information

Mutant Name	FN3368-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3368-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6023161 A-C Hetero INTERGENIC
SBS Chr1 6519993 C-A Hetero INTRON
SBS Chr1 12991308 C-T Hetero INTERGENIC
SBS Chr1 16930016 G-A Hetero INTERGENIC
SBS Chr1 21316437 C-A Hetero INTERGENIC
SBS Chr1 40076858 A-G Hetero INTRON
SBS Chr1 40995742 G-T Hetero INTRON
SBS Chr2 16659183 G-T Hetero INTERGENIC
SBS Chr2 21474756 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g207400
SBS Chr2 25677852 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 3099578 G-A Hetero INTERGENIC
SBS Chr3 19108258 G-A Hetero INTERGENIC
SBS Chr3 19309494 G-A Hetero INTERGENIC
SBS Chr3 26354973 T-A Homo INTERGENIC
SBS Chr3 26698274 G-A Hetero INTERGENIC
SBS Chr4 17127295 C-T Hetero INTERGENIC
SBS Chr4 24140695 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g154600
SBS Chr4 24251536 C-T Hetero INTERGENIC
SBS Chr4 27895072 C-A Hetero INTERGENIC
SBS Chr5 10699625 T-A Hetero INTERGENIC
SBS Chr5 11822338 C-G Hetero INTERGENIC
SBS Chr5 13581685 G-A Homo SYNONYMOUS_CODING
SBS Chr5 19083819 G-T Hetero INTERGENIC
SBS Chr5 19156601 G-A Homo INTRON
SBS Chr5 25009787 T-C Homo INTERGENIC
SBS Chr6 4789219 A-T Homo INTERGENIC
SBS Chr6 5941188 T-C Hetero INTERGENIC
SBS Chr7 11815619 T-G Hetero INTERGENIC
SBS Chr7 19995774 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g163700
SBS Chr7 20509498 C-T Hetero INTERGENIC
SBS Chr7 27224661 G-A Hetero INTERGENIC
SBS Chr8 9101232 C-T Homo INTRON
SBS Chr8 9178748 C-T Hetero INTERGENIC
SBS Chr8 27705510 A-T Hetero INTERGENIC
SBS Chr8 27705511 T-A Hetero INTERGENIC
SBS Chr9 963898 C-T Homo INTERGENIC
SBS Chr9 1792343 C-A Hetero INTERGENIC
SBS Chr9 2545134 T-A Hetero INTRON
SBS Chr9 2545135 T-A Hetero INTRON
SBS Chr9 3329900 G-A Homo INTERGENIC
SBS Chr9 4081749 C-T Hetero INTERGENIC
SBS Chr9 8969009 C-G Homo INTERGENIC
SBS Chr9 10489499 T-C Homo INTERGENIC
SBS Chr9 10859883 C-T Hetero INTERGENIC
SBS Chr9 17668488 C-A Hetero UTR_3_PRIME
SBS Chr9 22273775 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g201500
SBS Chr10 7265614 A-T Hetero INTERGENIC
SBS Chr12 806079 T-C Hetero INTERGENIC
SBS Chr12 3680796 A-T Hetero SPLICE_SITE_REGION
SBS Chr12 5276105 T-C Hetero INTERGENIC
SBS Chr12 7527228 T-A Hetero INTERGENIC
SBS Chr12 13016546 A-C Hetero INTERGENIC
SBS Chr12 20385542 T-C Homo NON_SYNONYMOUS_CODING OsKitaake12g159100

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2055001 2069000 13999 OsKitaake10g016100
Deletion Chr6 5032079 5032080 1
Deletion Chr1 6649990 6649992 2
Deletion Chr4 8898748 8898756 8
Deletion Chr6 9005181 9005182 1
Deletion Chr9 10130900 10130906 6
Deletion Chr3 10747220 10747222 2
Deletion Chr7 13816563 13816569 6
Deletion Chr9 15724629 15724632 3
Deletion Chr12 19009904 19009910 6
Deletion Chr1 19377850 19377852 2
Deletion Chr11 22926529 22926531 2
Deletion Chr7 27052247 27052248 1 OsKitaake07g252800
Deletion Chr11 28630026 28630028 2
Deletion Chr1 28815699 28815713 14 OsKitaake01g279800

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2115485 2115488 2
Insertion Chr6 1344386 1344389 2
Insertion Chr6 25185292 25185295 2
Insertion Chr7 8968727 8968729 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6023161	A-C	Hetero	INTERGENIC
SBS	Chr1	6519993	C-A	Hetero	INTRON
SBS	Chr1	12991308	C-T	Hetero	INTERGENIC
SBS	Chr1	16930016	G-A	Hetero	INTERGENIC
SBS	Chr1	21316437	C-A	Hetero	INTERGENIC
SBS	Chr1	40076858	A-G	Hetero	INTRON
SBS	Chr1	40995742	G-T	Hetero	INTRON
SBS	Chr2	16659183	G-T	Hetero	INTERGENIC
SBS	Chr2	21474756	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g207400
SBS	Chr2	25677852	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	3099578	G-A	Hetero	INTERGENIC
SBS	Chr3	19108258	G-A	Hetero	INTERGENIC
SBS	Chr3	19309494	G-A	Hetero	INTERGENIC
SBS	Chr3	26354973	T-A	Homo	INTERGENIC
SBS	Chr3	26698274	G-A	Hetero	INTERGENIC
SBS	Chr4	17127295	C-T	Hetero	INTERGENIC
SBS	Chr4	24140695	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g154600
SBS	Chr4	24251536	C-T	Hetero	INTERGENIC
SBS	Chr4	27895072	C-A	Hetero	INTERGENIC
SBS	Chr5	10699625	T-A	Hetero	INTERGENIC
SBS	Chr5	11822338	C-G	Hetero	INTERGENIC
SBS	Chr5	13581685	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	19083819	G-T	Hetero	INTERGENIC
SBS	Chr5	19156601	G-A	Homo	INTRON
SBS	Chr5	25009787	T-C	Homo	INTERGENIC
SBS	Chr6	4789219	A-T	Homo	INTERGENIC
SBS	Chr6	5941188	T-C	Hetero	INTERGENIC
SBS	Chr7	11815619	T-G	Hetero	INTERGENIC
SBS	Chr7	19995774	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g163700
SBS	Chr7	20509498	C-T	Hetero	INTERGENIC
SBS	Chr7	27224661	G-A	Hetero	INTERGENIC
SBS	Chr8	9101232	C-T	Homo	INTRON
SBS	Chr8	9178748	C-T	Hetero	INTERGENIC
SBS	Chr8	27705510	A-T	Hetero	INTERGENIC
SBS	Chr8	27705511	T-A	Hetero	INTERGENIC
SBS	Chr9	963898	C-T	Homo	INTERGENIC
SBS	Chr9	1792343	C-A	Hetero	INTERGENIC
SBS	Chr9	2545134	T-A	Hetero	INTRON
SBS	Chr9	2545135	T-A	Hetero	INTRON
SBS	Chr9	3329900	G-A	Homo	INTERGENIC
SBS	Chr9	4081749	C-T	Hetero	INTERGENIC
SBS	Chr9	8969009	C-G	Homo	INTERGENIC
SBS	Chr9	10489499	T-C	Homo	INTERGENIC
SBS	Chr9	10859883	C-T	Hetero	INTERGENIC
SBS	Chr9	17668488	C-A	Hetero	UTR_3_PRIME
SBS	Chr9	22273775	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g201500
SBS	Chr10	7265614	A-T	Hetero	INTERGENIC
SBS	Chr12	806079	T-C	Hetero	INTERGENIC
SBS	Chr12	3680796	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr12	5276105	T-C	Hetero	INTERGENIC
SBS	Chr12	7527228	T-A	Hetero	INTERGENIC
SBS	Chr12	13016546	A-C	Hetero	INTERGENIC
SBS	Chr12	20385542	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g159100

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2055001	2069000	13999	OsKitaake10g016100
Deletion	Chr6	5032079	5032080	1
Deletion	Chr1	6649990	6649992	2
Deletion	Chr4	8898748	8898756	8
Deletion	Chr6	9005181	9005182	1
Deletion	Chr9	10130900	10130906	6
Deletion	Chr3	10747220	10747222	2
Deletion	Chr7	13816563	13816569	6
Deletion	Chr9	15724629	15724632	3
Deletion	Chr12	19009904	19009910	6
Deletion	Chr1	19377850	19377852	2
Deletion	Chr11	22926529	22926531	2
Deletion	Chr7	27052247	27052248	1	OsKitaake07g252800
Deletion	Chr11	28630026	28630028	2
Deletion	Chr1	28815699	28815713	14	OsKitaake01g279800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes