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Mutant Information

Mutant Name	FN3369-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3369-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2444280 T-G Homo NON_SYNONYMOUS_CODING OsKitaake01g030800
SBS Chr1 2444282 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g030800
SBS Chr1 12699724 C-T Hetero INTRON
SBS Chr1 15336157 C-A Hetero INTERGENIC
SBS Chr1 21596676 A-T Hetero INTERGENIC
SBS Chr1 22127211 C-T Hetero INTERGENIC
SBS Chr1 35963297 C-T Hetero INTERGENIC
SBS Chr2 533129 C-A Hetero UTR_3_PRIME
SBS Chr2 533130 A-T Hetero UTR_3_PRIME
SBS Chr2 3593639 A-T Hetero INTERGENIC
SBS Chr2 15726229 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g162900
SBS Chr2 30795817 C-T Homo INTERGENIC
SBS Chr2 33860621 T-C Hetero INTERGENIC
SBS Chr3 3617537 G-A Hetero INTERGENIC
SBS Chr4 1481630 A-C Hetero INTERGENIC
SBS Chr4 5130866 G-T Hetero INTERGENIC
SBS Chr4 22714407 T-C Hetero INTERGENIC
SBS Chr5 16236564 G-T Hetero INTERGENIC
SBS Chr5 22568070 G-A Homo INTERGENIC
SBS Chr5 23507992 C-T Homo NON_SYNONYMOUS_CODING OsKitaake05g204900
SBS Chr5 29418395 G-A Homo SYNONYMOUS_CODING
SBS Chr6 10084605 G-A Hetero INTRON
SBS Chr6 15458325 C-T Hetero INTERGENIC
SBS Chr7 8675249 G-C Hetero INTERGENIC
SBS Chr7 8675341 G-C Hetero INTERGENIC
SBS Chr7 12980539 G-C Hetero INTERGENIC
SBS Chr7 15817053 T-C Hetero INTRON
SBS Chr7 28353153 A-T Hetero INTRON
SBS Chr8 5465817 T-C Homo INTERGENIC
SBS Chr8 21671331 C-T Hetero INTERGENIC
SBS Chr8 21903513 G-A Hetero INTRON
SBS Chr8 26691513 C-A Hetero INTRON
SBS Chr8 26843006 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g217600
SBS Chr9 3813408 A-T Hetero INTRON
SBS Chr9 12191462 T-C Hetero INTRON
SBS Chr9 13203524 G-A Hetero INTERGENIC
SBS Chr9 18603492 T-A Homo INTRON
SBS Chr11 10383834 A-G Hetero INTERGENIC
SBS Chr11 13815682 C-A Hetero INTERGENIC
SBS Chr11 15507599 T-C Hetero INTERGENIC
SBS Chr11 16874752 C-T Hetero INTERGENIC
SBS Chr11 19500992 C-T Hetero INTERGENIC
SBS Chr11 21718099 C-T Hetero INTERGENIC
SBS Chr11 21939499 C-G Hetero INTERGENIC
SBS Chr12 7616785 C-A Hetero INTERGENIC
SBS Chr12 18389401 C-T Hetero INTERGENIC
SBS Chr12 24037677 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g193400

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 195788 195801 13
Deletion Chr11 743086 743095 9
Deletion Chr11 3392617 3392632 15
Deletion Chr7 4508871 4508890 19
Deletion Chr1 5190213 5190215 2
Deletion Chr10 15583353 15583361 8
Deletion Chr8 18193539 18193560 21
Deletion Chr6 20411001 20533000 121999 13
Deletion Chr6 21366592 21366602 10
Deletion Chr1 24947404 24947415 11
Deletion Chr11 25442839 25442840 1
Deletion Chr3 26873431 26873433 2
Deletion Chr4 26953980 26953992 12
Deletion Chr11 28946452 28946453 1
Deletion Chr3 30291973 30291982 9
Deletion Chr3 33051444 33051445 1
Deletion Chr4 35889260 35889265 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1886185 1886190 4
Insertion Chr4 24843324 24843327 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12002330 Chr10 12966916
Translocation Chr12 12002341 Chr10 12977025
Translocation Chr6 20334077 Chr2 24921631 OsKitaake06g181800
Translocation Chr6 20334115 Chr1 22111197 OsKitaake06g181800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2444280	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g030800
SBS	Chr1	2444282	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g030800
SBS	Chr1	12699724	C-T	Hetero	INTRON
SBS	Chr1	15336157	C-A	Hetero	INTERGENIC
SBS	Chr1	21596676	A-T	Hetero	INTERGENIC
SBS	Chr1	22127211	C-T	Hetero	INTERGENIC
SBS	Chr1	35963297	C-T	Hetero	INTERGENIC
SBS	Chr2	533129	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	533130	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	3593639	A-T	Hetero	INTERGENIC
SBS	Chr2	15726229	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g162900
SBS	Chr2	30795817	C-T	Homo	INTERGENIC
SBS	Chr2	33860621	T-C	Hetero	INTERGENIC
SBS	Chr3	3617537	G-A	Hetero	INTERGENIC
SBS	Chr4	1481630	A-C	Hetero	INTERGENIC
SBS	Chr4	5130866	G-T	Hetero	INTERGENIC
SBS	Chr4	22714407	T-C	Hetero	INTERGENIC
SBS	Chr5	16236564	G-T	Hetero	INTERGENIC
SBS	Chr5	22568070	G-A	Homo	INTERGENIC
SBS	Chr5	23507992	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g204900
SBS	Chr5	29418395	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	10084605	G-A	Hetero	INTRON
SBS	Chr6	15458325	C-T	Hetero	INTERGENIC
SBS	Chr7	8675249	G-C	Hetero	INTERGENIC
SBS	Chr7	8675341	G-C	Hetero	INTERGENIC
SBS	Chr7	12980539	G-C	Hetero	INTERGENIC
SBS	Chr7	15817053	T-C	Hetero	INTRON
SBS	Chr7	28353153	A-T	Hetero	INTRON
SBS	Chr8	5465817	T-C	Homo	INTERGENIC
SBS	Chr8	21671331	C-T	Hetero	INTERGENIC
SBS	Chr8	21903513	G-A	Hetero	INTRON
SBS	Chr8	26691513	C-A	Hetero	INTRON
SBS	Chr8	26843006	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g217600
SBS	Chr9	3813408	A-T	Hetero	INTRON
SBS	Chr9	12191462	T-C	Hetero	INTRON
SBS	Chr9	13203524	G-A	Hetero	INTERGENIC
SBS	Chr9	18603492	T-A	Homo	INTRON
SBS	Chr11	10383834	A-G	Hetero	INTERGENIC
SBS	Chr11	13815682	C-A	Hetero	INTERGENIC
SBS	Chr11	15507599	T-C	Hetero	INTERGENIC
SBS	Chr11	16874752	C-T	Hetero	INTERGENIC
SBS	Chr11	19500992	C-T	Hetero	INTERGENIC
SBS	Chr11	21718099	C-T	Hetero	INTERGENIC
SBS	Chr11	21939499	C-G	Hetero	INTERGENIC
SBS	Chr12	7616785	C-A	Hetero	INTERGENIC
SBS	Chr12	18389401	C-T	Hetero	INTERGENIC
SBS	Chr12	24037677	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g193400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	195788	195801	13
Deletion	Chr11	743086	743095	9
Deletion	Chr11	3392617	3392632	15
Deletion	Chr7	4508871	4508890	19
Deletion	Chr1	5190213	5190215	2
Deletion	Chr10	15583353	15583361	8
Deletion	Chr8	18193539	18193560	21
Deletion	Chr6	20411001	20533000	121999	13
Deletion	Chr6	21366592	21366602	10
Deletion	Chr1	24947404	24947415	11
Deletion	Chr11	25442839	25442840	1
Deletion	Chr3	26873431	26873433	2
Deletion	Chr4	26953980	26953992	12
Deletion	Chr11	28946452	28946453	1
Deletion	Chr3	30291973	30291982	9
Deletion	Chr3	33051444	33051445	1
Deletion	Chr4	35889260	35889265	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	12002330	Chr10	12966916
Translocation	Chr12	12002341	Chr10	12977025
Translocation	Chr6	20334077	Chr2	24921631	OsKitaake06g181800
Translocation	Chr6	20334115	Chr1	22111197	OsKitaake06g181800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes