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Mutant Information

Mutant Name	FN3370-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3370-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1268804 C-T Homo INTRON
SBS Chr1 40439524 C-A Hetero INTERGENIC
SBS Chr2 33319293 A-G Hetero INTRON
SBS Chr3 11073436 A-G Hetero INTERGENIC
SBS Chr3 34942872 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g381700
SBS Chr4 8911475 T-A Homo INTERGENIC
SBS Chr4 11509483 C-T Homo INTERGENIC
SBS Chr4 16383081 C-T Hetero INTERGENIC
SBS Chr4 23336342 C-T Homo INTERGENIC
SBS Chr5 20382981 A-G Homo INTERGENIC
SBS Chr5 24513313 G-A Homo INTERGENIC
SBS Chr6 2218450 A-G Homo INTERGENIC
SBS Chr7 25272946 A-T Hetero INTERGENIC
SBS Chr8 1352765 G-A Homo INTERGENIC
SBS Chr8 4884270 G-A Hetero INTERGENIC
SBS Chr8 18259985 T-A Homo INTRON
SBS Chr8 21524897 C-T Hetero INTERGENIC
SBS Chr8 22458447 C-T Hetero INTERGENIC
SBS Chr9 5658645 G-A Hetero INTERGENIC
SBS Chr9 11765171 A-T Hetero INTERGENIC
SBS Chr10 166441 G-A Hetero INTERGENIC
SBS Chr10 5706917 G-A Homo INTERGENIC
SBS Chr11 7093366 G-A Hetero INTERGENIC
SBS Chr12 11832652 A-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1673364 1673374 10
Deletion Chr11 3356112 3356128 16 OsKitaake11g046700
Deletion Chr9 7264510 7264514 4
Deletion Chr4 8911091 8911094 3
Deletion Chr8 9131336 9131341 5
Deletion Chr5 9551323 9551334 11
Deletion Chr7 9923809 9923814 5
Deletion Chr7 11452832 11452835 3
Deletion Chr7 13723001 13730000 6999
Deletion Chr11 14325016 14325018 2
Deletion Chr8 17714825 17714826 1
Deletion Chr11 20138634 20138731 97
Deletion Chr4 20812972 20812975 3
Deletion Chr4 21673677 21673679 2
Deletion Chr2 36585781 36585782 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26522879 26522882 2
Insertion Chr5 25759113 25759116 2
Insertion Chr7 26906589 26906592 2
Insertion Chr8 3410627 3410632 4
Insertion Chr8 27499542 27499545 2
Insertion Chr11 17215403 17215407 3
Insertion Chr6 10794752 10794754 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 20289905 Chr2 3386328 2
Translocation Chr8 20289911 Chr2 3375056 2
Translocation Chr2 33024258 Chr1 35975626
Translocation Chr2 33025269 Chr1 35975627

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1268804	C-T	Homo	INTRON
SBS	Chr1	40439524	C-A	Hetero	INTERGENIC
SBS	Chr2	33319293	A-G	Hetero	INTRON
SBS	Chr3	11073436	A-G	Hetero	INTERGENIC
SBS	Chr3	34942872	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g381700
SBS	Chr4	8911475	T-A	Homo	INTERGENIC
SBS	Chr4	11509483	C-T	Homo	INTERGENIC
SBS	Chr4	16383081	C-T	Hetero	INTERGENIC
SBS	Chr4	23336342	C-T	Homo	INTERGENIC
SBS	Chr5	20382981	A-G	Homo	INTERGENIC
SBS	Chr5	24513313	G-A	Homo	INTERGENIC
SBS	Chr6	2218450	A-G	Homo	INTERGENIC
SBS	Chr7	25272946	A-T	Hetero	INTERGENIC
SBS	Chr8	1352765	G-A	Homo	INTERGENIC
SBS	Chr8	4884270	G-A	Hetero	INTERGENIC
SBS	Chr8	18259985	T-A	Homo	INTRON
SBS	Chr8	21524897	C-T	Hetero	INTERGENIC
SBS	Chr8	22458447	C-T	Hetero	INTERGENIC
SBS	Chr9	5658645	G-A	Hetero	INTERGENIC
SBS	Chr9	11765171	A-T	Hetero	INTERGENIC
SBS	Chr10	166441	G-A	Hetero	INTERGENIC
SBS	Chr10	5706917	G-A	Homo	INTERGENIC
SBS	Chr11	7093366	G-A	Hetero	INTERGENIC
SBS	Chr12	11832652	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1673364	1673374	10
Deletion	Chr11	3356112	3356128	16	OsKitaake11g046700
Deletion	Chr9	7264510	7264514	4
Deletion	Chr4	8911091	8911094	3
Deletion	Chr8	9131336	9131341	5
Deletion	Chr5	9551323	9551334	11
Deletion	Chr7	9923809	9923814	5
Deletion	Chr7	11452832	11452835	3
Deletion	Chr7	13723001	13730000	6999
Deletion	Chr11	14325016	14325018	2
Deletion	Chr8	17714825	17714826	1
Deletion	Chr11	20138634	20138731	97
Deletion	Chr4	20812972	20812975	3
Deletion	Chr4	21673677	21673679	2
Deletion	Chr2	36585781	36585782	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	20289905	Chr2	3386328	2
Translocation	Chr8	20289911	Chr2	3375056	2
Translocation	Chr2	33024258	Chr1	35975626
Translocation	Chr2	33025269	Chr1	35975627

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes