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Mutant Information

Mutant Name	FN3371-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3371-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28174932 A-G Hetero INTERGENIC
SBS Chr1 33647811 C-T Hetero INTERGENIC
SBS Chr1 37450439 C-T Homo UTR_3_PRIME
SBS Chr2 7806386 C-T Hetero INTERGENIC
SBS Chr2 7806388 G-A Hetero INTERGENIC
SBS Chr2 12707818 G-A Hetero INTERGENIC
SBS Chr2 26290141 T-A Homo INTERGENIC
SBS Chr2 26290142 G-A Homo INTERGENIC
SBS Chr2 26290144 C-A Homo INTERGENIC
SBS Chr2 26407815 G-A Homo INTERGENIC
SBS Chr2 30116755 T-A Hetero INTERGENIC
SBS Chr3 1319019 G-A Homo INTERGENIC
SBS Chr3 2041254 C-T Homo INTERGENIC
SBS Chr4 2682309 T-C Hetero INTERGENIC
SBS Chr4 7184170 C-T Hetero INTRON
SBS Chr4 8496300 T-C Hetero INTERGENIC
SBS Chr4 27230120 C-T Homo INTERGENIC
SBS Chr4 29236914 T-C Homo INTRON
SBS Chr4 36330768 T-C Homo INTERGENIC
SBS Chr5 7345982 T-A Hetero INTERGENIC
SBS Chr5 27300049 T-C Hetero INTRON
SBS Chr6 1890350 A-G Hetero INTERGENIC
SBS Chr6 11607215 C-A Hetero INTERGENIC
SBS Chr6 14518099 G-A Hetero INTERGENIC
SBS Chr6 19750205 A-G Hetero INTERGENIC
SBS Chr7 16359170 A-T Homo INTERGENIC
SBS Chr8 9806217 G-A Homo INTERGENIC
SBS Chr8 11935203 A-G Homo INTERGENIC
SBS Chr10 2650309 T-A Hetero INTERGENIC
SBS Chr10 5452243 C-A Hetero INTERGENIC
SBS Chr11 10511272 C-T Homo INTRON
SBS Chr11 27369597 T-C Hetero INTERGENIC
SBS Chr12 1062575 G-T Hetero INTERGENIC
SBS Chr12 10054443 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g095100
SBS Chr12 10054444 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g095100
SBS Chr12 10534417 G-A Hetero INTERGENIC
SBS Chr12 11329426 G-A Hetero INTERGENIC
SBS Chr12 11329814 T-A Hetero INTERGENIC
SBS Chr12 14745285 T-A Hetero INTERGENIC
SBS Chr12 16410567 C-A Hetero INTERGENIC
SBS Chr12 17303778 T-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 713540 713550 10
Deletion Chr1 1967424 1967445 21
Deletion Chr3 4356343 4356353 10
Deletion Chr2 4810557 4810562 5
Deletion Chr9 5127602 5127603 1
Deletion Chr9 5827001 5919000 91999 4
Deletion Chr5 5853588 5853591 3
Deletion Chr3 5853781 5853789 8
Deletion Chr2 7356922 7356926 4
Deletion Chr8 8655633 8655649 16
Deletion Chr8 15511740 15511748 8
Deletion Chr10 17100379 17100384 5
Deletion Chr9 18795941 18795943 2
Deletion Chr9 21060780 21060781 1
Deletion Chr8 25955431 25955440 9
Deletion Chr11 28372332 28372341 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1312965 1312968 2
Insertion Chr1 34235107 34235110 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 26234346 26391851 2
Inversion Chr2 26234356 26391865 2
Inversion Chr2 28796894 28919837 OsKitaake02g290800
Inversion Chr1 32861504 33186974
Inversion Chr1 32861518 33186982

Translocations: 11

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2832261 Chr2 33017010 OsKitaake02g339500
Translocation Chr5 2832666 Chr2 33017019 OsKitaake02g339500
Translocation Chr5 2832837 Chr2 8101325
Translocation Chr5 2833294 Chr2 8101320
Translocation Chr9 6998843 Chr2 23935089 2
Translocation Chr9 6999457 Chr2 23935638 2
Translocation Chr5 9942793 Chr2 31390317
Translocation Chr11 18896286 Chr3 35710698 OsKitaake11g147400
Translocation Chr11 18896287 Chr3 35708227 OsKitaake11g147400
Translocation Chr6 26212617 Chr2 28919844 OsKitaake02g290800
Translocation Chr6 26215801 Chr2 26687254 OsKitaake02g266800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28174932	A-G	Hetero	INTERGENIC
SBS	Chr1	33647811	C-T	Hetero	INTERGENIC
SBS	Chr1	37450439	C-T	Homo	UTR_3_PRIME
SBS	Chr2	7806386	C-T	Hetero	INTERGENIC
SBS	Chr2	7806388	G-A	Hetero	INTERGENIC
SBS	Chr2	12707818	G-A	Hetero	INTERGENIC
SBS	Chr2	26290141	T-A	Homo	INTERGENIC
SBS	Chr2	26290142	G-A	Homo	INTERGENIC
SBS	Chr2	26290144	C-A	Homo	INTERGENIC
SBS	Chr2	26407815	G-A	Homo	INTERGENIC
SBS	Chr2	30116755	T-A	Hetero	INTERGENIC
SBS	Chr3	1319019	G-A	Homo	INTERGENIC
SBS	Chr3	2041254	C-T	Homo	INTERGENIC
SBS	Chr4	2682309	T-C	Hetero	INTERGENIC
SBS	Chr4	7184170	C-T	Hetero	INTRON
SBS	Chr4	8496300	T-C	Hetero	INTERGENIC
SBS	Chr4	27230120	C-T	Homo	INTERGENIC
SBS	Chr4	29236914	T-C	Homo	INTRON
SBS	Chr4	36330768	T-C	Homo	INTERGENIC
SBS	Chr5	7345982	T-A	Hetero	INTERGENIC
SBS	Chr5	27300049	T-C	Hetero	INTRON
SBS	Chr6	1890350	A-G	Hetero	INTERGENIC
SBS	Chr6	11607215	C-A	Hetero	INTERGENIC
SBS	Chr6	14518099	G-A	Hetero	INTERGENIC
SBS	Chr6	19750205	A-G	Hetero	INTERGENIC
SBS	Chr7	16359170	A-T	Homo	INTERGENIC
SBS	Chr8	9806217	G-A	Homo	INTERGENIC
SBS	Chr8	11935203	A-G	Homo	INTERGENIC
SBS	Chr10	2650309	T-A	Hetero	INTERGENIC
SBS	Chr10	5452243	C-A	Hetero	INTERGENIC
SBS	Chr11	10511272	C-T	Homo	INTRON
SBS	Chr11	27369597	T-C	Hetero	INTERGENIC
SBS	Chr12	1062575	G-T	Hetero	INTERGENIC
SBS	Chr12	10054443	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g095100
SBS	Chr12	10054444	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g095100
SBS	Chr12	10534417	G-A	Hetero	INTERGENIC
SBS	Chr12	11329426	G-A	Hetero	INTERGENIC
SBS	Chr12	11329814	T-A	Hetero	INTERGENIC
SBS	Chr12	14745285	T-A	Hetero	INTERGENIC
SBS	Chr12	16410567	C-A	Hetero	INTERGENIC
SBS	Chr12	17303778	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	713540	713550	10
Deletion	Chr1	1967424	1967445	21
Deletion	Chr3	4356343	4356353	10
Deletion	Chr2	4810557	4810562	5
Deletion	Chr9	5127602	5127603	1
Deletion	Chr9	5827001	5919000	91999	4
Deletion	Chr5	5853588	5853591	3
Deletion	Chr3	5853781	5853789	8
Deletion	Chr2	7356922	7356926	4
Deletion	Chr8	8655633	8655649	16
Deletion	Chr8	15511740	15511748	8
Deletion	Chr10	17100379	17100384	5
Deletion	Chr9	18795941	18795943	2
Deletion	Chr9	21060780	21060781	1
Deletion	Chr8	25955431	25955440	9
Deletion	Chr11	28372332	28372341	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	26234346	26391851	2
Inversion	Chr2	26234356	26391865	2
Inversion	Chr2	28796894	28919837	OsKitaake02g290800
Inversion	Chr1	32861504	33186974
Inversion	Chr1	32861518	33186982

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes