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| Mutant Information |
|---|
| Mutant Name | FN3372-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3372-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 34634445 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 5159298 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 24673423 | C-G | Homo | INTRON | |
| SBS | Chr2 | 27825502 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 3125538 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5124499 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 14018452 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 7560304 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 10804197 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11938671 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27496761 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 30762350 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 17182033 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 17885997 | C-A | Homo | INTRON | |
| SBS | Chr6 | 16368747 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 25868761 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 7765173 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7517153 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8682226 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19433138 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20992325 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 19794241 | G-A | Homo | INTRON | |
| SBS | Chr11 | 287640 | C-A | Hetero | INTRON | |
| SBS | Chr11 | 13570779 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 14641806 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16294404 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18034135 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6110255 | T-C | Homo | INTRON | |
| SBS | Chr12 | 16993398 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 24206775 | G-A | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 2022982 | 2022984 | 2 | |
| Deletion | Chr10 | 14838410 | 14838413 | 3 | |
| Deletion | Chr6 | 15531833 | 15531834 | 1 | |
| Deletion | Chr3 | 20027673 | 20027676 | 3 | |
| Deletion | Chr11 | 26249001 | 26338000 | 88999 | 14 |
| Deletion | Chr6 | 29447288 | 29447291 | 3 | OsKitaake06g272800 |
| Deletion | Chr4 | 29467518 | 29467534 | 16 | |
| Deletion | Chr3 | 33991417 | 33991425 | 8 | OsKitaake03g367000 |
| Deletion | Chr3 | 35571209 | 35571210 | 1 | OsKitaake03g390100 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 10838517 | 10838520 | 2 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 6752053 | 6768828 | OsKitaake05g068200 |
| Inversion | Chr5 | 6752055 | 6768828 | OsKitaake05g068200 |
| Inversion | Chr3 | 15004428 | 15533827 | 2 |
| Inversion | Chr3 | 15004443 | 15533840 | 2 |
| Inversion | Chr10 | 21343334 | 21362116 | |
| Inversion | Chr10 | 21343337 | 21362117 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 5084122 | Chr3 | 19275568 |