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Mutant Information

Mutant Name	FN3373-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3373-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11769261 T-G Hetero INTERGENIC
SBS Chr1 12890828 A-G Hetero INTERGENIC
SBS Chr1 16193659 G-A Homo INTERGENIC
SBS Chr1 20821871 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g204100
SBS Chr1 24964897 T-C Hetero INTERGENIC
SBS Chr1 25406498 G-C Hetero INTERGENIC
SBS Chr1 25406499 G-A Hetero INTERGENIC
SBS Chr1 28976826 T-C Hetero INTRON
SBS Chr1 42289650 T-A Hetero INTERGENIC
SBS Chr2 3598867 T-G Hetero INTERGENIC
SBS Chr2 16749529 G-A Hetero INTRON
SBS Chr2 22380411 C-T Hetero INTERGENIC
SBS Chr2 23054175 A-G Hetero INTERGENIC
SBS Chr2 25051186 C-T Hetero INTERGENIC
SBS Chr2 32012968 T-A Hetero INTERGENIC
SBS Chr2 32449793 C-T Hetero INTRON
SBS Chr3 556444 C-T Hetero INTERGENIC
SBS Chr3 15740470 C-G Hetero INTERGENIC
SBS Chr3 16419671 T-A Hetero INTERGENIC
SBS Chr4 12879138 G-A Hetero INTERGENIC
SBS Chr4 24638779 T-A Homo INTERGENIC
SBS Chr4 31855258 A-G Hetero INTRON
SBS Chr4 32042963 T-C Hetero INTERGENIC
SBS Chr4 36274604 G-T Hetero INTERGENIC
SBS Chr5 575547 G-T Hetero INTRON
SBS Chr5 575548 A-T Hetero INTRON
SBS Chr5 11760500 C-T Hetero INTERGENIC
SBS Chr5 14690019 T-G Hetero INTERGENIC
SBS Chr5 15736219 C-T Hetero INTERGENIC
SBS Chr5 20595486 T-C Hetero INTERGENIC
SBS Chr6 15672834 G-C Hetero INTERGENIC
SBS Chr6 18773905 C-T Hetero INTRON
SBS Chr6 19746014 T-G Hetero INTERGENIC
SBS Chr6 28339062 G-T Hetero INTERGENIC
SBS Chr6 28339063 A-C Hetero INTERGENIC
SBS Chr7 4259113 T-A Hetero INTERGENIC
SBS Chr7 5908906 G-A Hetero UTR_5_PRIME
SBS Chr7 27952612 C-T Hetero UTR_5_PRIME
SBS Chr8 6256803 G-T Homo INTERGENIC
SBS Chr8 11582226 A-G Hetero INTERGENIC
SBS Chr8 11767787 C-T Hetero INTRON
SBS Chr8 16611052 G-A Hetero INTERGENIC
SBS Chr8 18169643 C-T Hetero INTERGENIC
SBS Chr8 21876224 C-T Hetero INTERGENIC
SBS Chr8 24440311 C-T Homo INTERGENIC
SBS Chr9 21824252 T-C Homo INTRON
SBS Chr10 389351 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g002700
SBS Chr10 809697 A-G Hetero INTERGENIC
SBS Chr10 15933010 T-A Hetero INTERGENIC
SBS Chr10 16210860 T-G Hetero INTERGENIC
SBS Chr11 20686319 C-T Hetero INTERGENIC
SBS Chr11 25624603 C-T Hetero UTR_3_PRIME
SBS Chr11 25624604 A-T Hetero UTR_3_PRIME
SBS Chr12 16015228 G-A Hetero INTERGENIC
SBS Chr12 17031101 C-T Hetero INTERGENIC
SBS Chr12 17349616 G-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 115378 115386 8
Deletion Chr8 511499 511510 11
Deletion Chr9 8113165 8113166 1
Deletion Chr9 9744437 9744439 2
Deletion Chr2 10221645 10221647 2
Deletion Chr11 11301934 11301941 7
Deletion Chr12 15663489 15663497 8
Deletion Chr10 16815706 16815745 39
Deletion Chr7 18256251 18256252 1
Deletion Chr11 19591005 19591006 1
Deletion Chr12 26111716 26111726 10
Deletion Chr1 28403001 28625000 221999 26

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 932485 932487 1
Insertion Chr7 15700486 15700489 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 191245 Chr4 24458978 OsKitaake12g002100
Translocation Chr12 191254 Chr4 24479887 OsKitaake12g002100
Translocation Chr4 4213730 Chr3 19256467
Translocation Chr10 11207332 Chr3 19256383

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11769261	T-G	Hetero	INTERGENIC
SBS	Chr1	12890828	A-G	Hetero	INTERGENIC
SBS	Chr1	16193659	G-A	Homo	INTERGENIC
SBS	Chr1	20821871	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g204100
SBS	Chr1	24964897	T-C	Hetero	INTERGENIC
SBS	Chr1	25406498	G-C	Hetero	INTERGENIC
SBS	Chr1	25406499	G-A	Hetero	INTERGENIC
SBS	Chr1	28976826	T-C	Hetero	INTRON
SBS	Chr1	42289650	T-A	Hetero	INTERGENIC
SBS	Chr2	3598867	T-G	Hetero	INTERGENIC
SBS	Chr2	16749529	G-A	Hetero	INTRON
SBS	Chr2	22380411	C-T	Hetero	INTERGENIC
SBS	Chr2	23054175	A-G	Hetero	INTERGENIC
SBS	Chr2	25051186	C-T	Hetero	INTERGENIC
SBS	Chr2	32012968	T-A	Hetero	INTERGENIC
SBS	Chr2	32449793	C-T	Hetero	INTRON
SBS	Chr3	556444	C-T	Hetero	INTERGENIC
SBS	Chr3	15740470	C-G	Hetero	INTERGENIC
SBS	Chr3	16419671	T-A	Hetero	INTERGENIC
SBS	Chr4	12879138	G-A	Hetero	INTERGENIC
SBS	Chr4	24638779	T-A	Homo	INTERGENIC
SBS	Chr4	31855258	A-G	Hetero	INTRON
SBS	Chr4	32042963	T-C	Hetero	INTERGENIC
SBS	Chr4	36274604	G-T	Hetero	INTERGENIC
SBS	Chr5	575547	G-T	Hetero	INTRON
SBS	Chr5	575548	A-T	Hetero	INTRON
SBS	Chr5	11760500	C-T	Hetero	INTERGENIC
SBS	Chr5	14690019	T-G	Hetero	INTERGENIC
SBS	Chr5	15736219	C-T	Hetero	INTERGENIC
SBS	Chr5	20595486	T-C	Hetero	INTERGENIC
SBS	Chr6	15672834	G-C	Hetero	INTERGENIC
SBS	Chr6	18773905	C-T	Hetero	INTRON
SBS	Chr6	19746014	T-G	Hetero	INTERGENIC
SBS	Chr6	28339062	G-T	Hetero	INTERGENIC
SBS	Chr6	28339063	A-C	Hetero	INTERGENIC
SBS	Chr7	4259113	T-A	Hetero	INTERGENIC
SBS	Chr7	5908906	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	27952612	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	6256803	G-T	Homo	INTERGENIC
SBS	Chr8	11582226	A-G	Hetero	INTERGENIC
SBS	Chr8	11767787	C-T	Hetero	INTRON
SBS	Chr8	16611052	G-A	Hetero	INTERGENIC
SBS	Chr8	18169643	C-T	Hetero	INTERGENIC
SBS	Chr8	21876224	C-T	Hetero	INTERGENIC
SBS	Chr8	24440311	C-T	Homo	INTERGENIC
SBS	Chr9	21824252	T-C	Homo	INTRON
SBS	Chr10	389351	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g002700
SBS	Chr10	809697	A-G	Hetero	INTERGENIC
SBS	Chr10	15933010	T-A	Hetero	INTERGENIC
SBS	Chr10	16210860	T-G	Hetero	INTERGENIC
SBS	Chr11	20686319	C-T	Hetero	INTERGENIC
SBS	Chr11	25624603	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	25624604	A-T	Hetero	UTR_3_PRIME
SBS	Chr12	16015228	G-A	Hetero	INTERGENIC
SBS	Chr12	17031101	C-T	Hetero	INTERGENIC
SBS	Chr12	17349616	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	115378	115386	8
Deletion	Chr8	511499	511510	11
Deletion	Chr9	8113165	8113166	1
Deletion	Chr9	9744437	9744439	2
Deletion	Chr2	10221645	10221647	2
Deletion	Chr11	11301934	11301941	7
Deletion	Chr12	15663489	15663497	8
Deletion	Chr10	16815706	16815745	39
Deletion	Chr7	18256251	18256252	1
Deletion	Chr11	19591005	19591006	1
Deletion	Chr12	26111716	26111726	10
Deletion	Chr1	28403001	28625000	221999	26

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	191245	Chr4	24458978	OsKitaake12g002100
Translocation	Chr12	191254	Chr4	24479887	OsKitaake12g002100
Translocation	Chr4	4213730	Chr3	19256467
Translocation	Chr10	11207332	Chr3	19256383

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes