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| Mutant Information |
|---|
| Mutant Name | FN3374-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3374-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 964060 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 24522029 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 28282122 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23102859 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 27008722 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27008725 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 31323212 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 6079181 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 12380153 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 18493470 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 34688477 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 8779612 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 1092473 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10017884 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17273530 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 17430564 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 20361109 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 22316910 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 2011780 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 9215132 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 16527681 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 91150 | G-C | Hetero | INTRON | |
| SBS | Chr11 | 22247691 | A-T | Hetero | INTERGENIC |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2643527 | 2643528 | 1 | |
| Deletion | Chr3 | 4119269 | 4119280 | 11 | |
| Deletion | Chr8 | 11549571 | 11549582 | 11 | |
| Deletion | Chr7 | 11707335 | 11707340 | 5 | |
| Deletion | Chr5 | 13607126 | 13607135 | 9 | |
| Deletion | Chr11 | 13854948 | 13854949 | 1 | |
| Deletion | Chr5 | 13874832 | 13874833 | 1 | |
| Deletion | Chr5 | 13956118 | 13956119 | 1 | |
| Deletion | Chr1 | 14814176 | 14814178 | 2 | |
| Deletion | Chr9 | 16660269 | 16660273 | 4 | |
| Deletion | Chr5 | 18350204 | 18350213 | 9 | |
| Deletion | Chr3 | 20972356 | 20972358 | 2 | |
| Deletion | Chr3 | 21271610 | 21271612 | 2 | |
| Deletion | Chr4 | 23135228 | 23135230 | 2 | |
| Deletion | Chr5 | 24232248 | 24232275 | 27 | |
| Deletion | Chr3 | 25206157 | 25206163 | 6 | OsKitaake03g266701 |
| Deletion | Chr2 | 26730530 | 26730546 | 16 | |
| Deletion | Chr5 | 26938798 | 26938801 | 3 | |
| Deletion | Chr3 | 27298201 | 27298204 | 3 | OsKitaake03g281200 |
| Deletion | Chr5 | 28019929 | 28019942 | 13 | |
| Deletion | Chr3 | 30162406 | 30162410 | 4 | |
| Deletion | Chr1 | 32006091 | 32006093 | 2 | |
| Deletion | Chr2 | 35605784 | 35605791 | 7 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 19294616 | 19294619 | 2 | |
| Insertion | Chr6 | 16647037 | 16647040 | 2 | |
| Insertion | Chr12 | 14892692 | 14892695 | 2 | |
| Insertion | Chr12 | 17628256 | 17628259 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 492607 | 572521 | |
| Inversion | Chr7 | 492613 | 572530 | |
| Inversion | Chr6 | 25051701 | 25927314 | OsKitaake06g231000 |
| Inversion | Chr6 | 25917237 | 25927316 | 2 |