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Mutant Information

Mutant Name	FN3375-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3375-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3446710 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 16291998 G-A Hetero INTERGENIC
SBS Chr1 38961234 G-T Hetero INTERGENIC
SBS Chr1 40519828 C-T Hetero INTERGENIC
SBS Chr2 9291557 C-G Hetero INTERGENIC
SBS Chr2 20412789 C-A Hetero INTERGENIC
SBS Chr2 36809658 G-A Homo SYNONYMOUS_CODING
SBS Chr3 271345 C-T Homo INTERGENIC
SBS Chr3 9683992 A-C Homo SPLICE_SITE_REGION
SBS Chr3 37794328 A-G Hetero #VALUE!
SBS Chr4 5757004 G-A Hetero INTERGENIC
SBS Chr4 9580019 C-A Hetero INTERGENIC
SBS Chr4 10930926 G-A Hetero INTERGENIC
SBS Chr4 18937054 T-A Hetero INTRON
SBS Chr4 30450487 G-A Hetero UTR_3_PRIME
SBS Chr5 14168616 C-T Hetero INTERGENIC
SBS Chr5 14932259 C-G Hetero INTERGENIC
SBS Chr5 15937589 C-G Hetero INTERGENIC
SBS Chr5 28164436 T-C Hetero UTR_5_PRIME
SBS Chr5 30097816 G-A Hetero INTERGENIC
SBS Chr6 8170697 C-T Homo SYNONYMOUS_CODING
SBS Chr6 12925039 C-T Homo INTERGENIC
SBS Chr6 14988315 A-T Homo INTERGENIC
SBS Chr6 16102151 G-T Hetero INTERGENIC
SBS Chr6 16143970 G-T Homo UTR_3_PRIME
SBS Chr6 18067073 T-A Homo INTERGENIC
SBS Chr6 27664534 T-C Homo INTERGENIC
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 17541571 G-A Hetero INTERGENIC
SBS Chr7 19955200 T-A Homo INTERGENIC
SBS Chr7 20339297 C-T Homo INTERGENIC
SBS Chr7 22001460 C-T Homo INTERGENIC
SBS Chr7 24076870 T-A Hetero INTERGENIC
SBS Chr8 6428935 T-C Hetero INTERGENIC
SBS Chr8 7760886 C-T Hetero INTERGENIC
SBS Chr9 7796051 C-T Homo INTERGENIC
SBS Chr9 9676503 G-A Hetero INTERGENIC
SBS Chr9 16078263 G-A Hetero INTERGENIC
SBS Chr10 5103847 A-G Hetero INTERGENIC
SBS Chr10 16060881 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g106600
SBS Chr10 16266879 A-G Hetero INTERGENIC
SBS Chr11 8230594 T-A Hetero INTERGENIC
SBS Chr11 9358183 A-G Hetero INTERGENIC
SBS Chr11 10175574 G-T Hetero INTERGENIC
SBS Chr11 13364030 G-A Hetero INTERGENIC
SBS Chr11 18126362 G-C Hetero INTERGENIC
SBS Chr11 26858785 G-A Hetero INTERGENIC
SBS Chr11 29311495 C-A Hetero INTERGENIC
SBS Chr12 9369259 C-G Hetero INTERGENIC
SBS Chr12 21380443 C-T Hetero INTERGENIC
SBS Chr12 21842558 G-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 523078 523079 1
Deletion Chr6 5521200 5521201 1
Deletion Chr8 6053225 6053229 4
Deletion Chr2 7997001 8047000 49999 3
Deletion Chr11 8057001 8097000 39999 9
Deletion Chr1 10614235 10614243 8
Deletion Chr4 12312075 12312082 7
Deletion Chr10 13040500 13040505 5
Deletion Chr7 13721001 13729000 7999
Deletion Chr2 19423615 19423619 4
Deletion Chr6 19887745 19887746 1
Deletion Chr9 20967566 20967567 1
Deletion Chr6 25568449 25568454 5
Deletion Chr11 27004305 27004309 4
Deletion Chr1 27039357 27039375 18
Deletion Chr8 28456327 28456329 2
Deletion Chr7 29467281 29467287 6
Deletion Chr2 32495031 32495034 3
Deletion Chr4 33757825 33757827 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 7770726 7770730 3
Insertion Chr6 13871280 13871283 2
Insertion Chr6 26777433 26777436 2
Insertion Chr7 11010598 11010602 3
Insertion Chr10 22514829 22514832 2
Insertion Chr12 26220803 26220808 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 9510955 9639130
Inversion Chr7 9510972 9639142

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3446710	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	16291998	G-A	Hetero	INTERGENIC
SBS	Chr1	38961234	G-T	Hetero	INTERGENIC
SBS	Chr1	40519828	C-T	Hetero	INTERGENIC
SBS	Chr2	9291557	C-G	Hetero	INTERGENIC
SBS	Chr2	20412789	C-A	Hetero	INTERGENIC
SBS	Chr2	36809658	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	271345	C-T	Homo	INTERGENIC
SBS	Chr3	9683992	A-C	Homo	SPLICE_SITE_REGION
SBS	Chr3	37794328	A-G	Hetero	#VALUE!
SBS	Chr4	5757004	G-A	Hetero	INTERGENIC
SBS	Chr4	9580019	C-A	Hetero	INTERGENIC
SBS	Chr4	10930926	G-A	Hetero	INTERGENIC
SBS	Chr4	18937054	T-A	Hetero	INTRON
SBS	Chr4	30450487	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	14168616	C-T	Hetero	INTERGENIC
SBS	Chr5	14932259	C-G	Hetero	INTERGENIC
SBS	Chr5	15937589	C-G	Hetero	INTERGENIC
SBS	Chr5	28164436	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	30097816	G-A	Hetero	INTERGENIC
SBS	Chr6	8170697	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	12925039	C-T	Homo	INTERGENIC
SBS	Chr6	14988315	A-T	Homo	INTERGENIC
SBS	Chr6	16102151	G-T	Hetero	INTERGENIC
SBS	Chr6	16143970	G-T	Homo	UTR_3_PRIME
SBS	Chr6	18067073	T-A	Homo	INTERGENIC
SBS	Chr6	27664534	T-C	Homo	INTERGENIC
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	17541571	G-A	Hetero	INTERGENIC
SBS	Chr7	19955200	T-A	Homo	INTERGENIC
SBS	Chr7	20339297	C-T	Homo	INTERGENIC
SBS	Chr7	22001460	C-T	Homo	INTERGENIC
SBS	Chr7	24076870	T-A	Hetero	INTERGENIC
SBS	Chr8	6428935	T-C	Hetero	INTERGENIC
SBS	Chr8	7760886	C-T	Hetero	INTERGENIC
SBS	Chr9	7796051	C-T	Homo	INTERGENIC
SBS	Chr9	9676503	G-A	Hetero	INTERGENIC
SBS	Chr9	16078263	G-A	Hetero	INTERGENIC
SBS	Chr10	5103847	A-G	Hetero	INTERGENIC
SBS	Chr10	16060881	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g106600
SBS	Chr10	16266879	A-G	Hetero	INTERGENIC
SBS	Chr11	8230594	T-A	Hetero	INTERGENIC
SBS	Chr11	9358183	A-G	Hetero	INTERGENIC
SBS	Chr11	10175574	G-T	Hetero	INTERGENIC
SBS	Chr11	13364030	G-A	Hetero	INTERGENIC
SBS	Chr11	18126362	G-C	Hetero	INTERGENIC
SBS	Chr11	26858785	G-A	Hetero	INTERGENIC
SBS	Chr11	29311495	C-A	Hetero	INTERGENIC
SBS	Chr12	9369259	C-G	Hetero	INTERGENIC
SBS	Chr12	21380443	C-T	Hetero	INTERGENIC
SBS	Chr12	21842558	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	523078	523079	1
Deletion	Chr6	5521200	5521201	1
Deletion	Chr8	6053225	6053229	4
Deletion	Chr2	7997001	8047000	49999	3
Deletion	Chr11	8057001	8097000	39999	9
Deletion	Chr1	10614235	10614243	8
Deletion	Chr4	12312075	12312082	7
Deletion	Chr10	13040500	13040505	5
Deletion	Chr7	13721001	13729000	7999
Deletion	Chr2	19423615	19423619	4
Deletion	Chr6	19887745	19887746	1
Deletion	Chr9	20967566	20967567	1
Deletion	Chr6	25568449	25568454	5
Deletion	Chr11	27004305	27004309	4
Deletion	Chr1	27039357	27039375	18
Deletion	Chr8	28456327	28456329	2
Deletion	Chr7	29467281	29467287	6
Deletion	Chr2	32495031	32495034	3
Deletion	Chr4	33757825	33757827	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9510955	9639130
Inversion	Chr7	9510972	9639142

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes