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Mutant Information

Mutant Name	FN3376-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3376-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1173256 G-A Hetero INTERGENIC
SBS Chr1 4259190 T-G Hetero INTRON
SBS Chr1 13883562 C-T Homo INTERGENIC
SBS Chr1 34866211 C-T Hetero INTERGENIC
SBS Chr1 39767711 A-T Hetero INTERGENIC
SBS Chr2 4656031 A-G Hetero INTERGENIC
SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 16253454 T-A Homo INTERGENIC
SBS Chr2 27343014 T-G Homo INTERGENIC
SBS Chr3 1666536 T-A Hetero INTERGENIC
SBS Chr3 1928613 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 3084198 A-G Hetero SPLICE_SITE_REGION
SBS Chr3 3745389 A-G Hetero INTERGENIC
SBS Chr3 16664018 G-A Hetero INTERGENIC
SBS Chr3 17244140 G-T Homo INTERGENIC
SBS Chr3 24357396 G-A Hetero INTERGENIC
SBS Chr3 26490432 C-T Hetero INTERGENIC
SBS Chr4 2882288 G-T Homo INTERGENIC
SBS Chr4 2882289 C-T Homo INTERGENIC
SBS Chr4 3497267 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g017300
SBS Chr4 18554439 G-A Hetero INTRON
SBS Chr4 25665409 G-A Homo INTERGENIC
SBS Chr4 31487526 C-T Hetero INTERGENIC
SBS Chr5 11188794 C-T Hetero INTERGENIC
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr5 23252568 C-T Hetero INTERGENIC
SBS Chr5 28352939 T-C Hetero INTERGENIC
SBS Chr6 3724063 T-A Hetero INTERGENIC
SBS Chr6 11532419 C-T Hetero INTERGENIC
SBS Chr6 23985907 C-T Hetero INTERGENIC
SBS Chr7 19542745 T-A Hetero INTERGENIC
SBS Chr7 21486408 A-C Homo INTERGENIC
SBS Chr8 2806400 G-A Homo UTR_5_PRIME
SBS Chr8 5289616 G-A Hetero INTERGENIC
SBS Chr8 14092609 C-T Hetero INTERGENIC
SBS Chr8 14733999 C-A Hetero INTERGENIC
SBS Chr8 14960830 G-C Hetero INTERGENIC
SBS Chr8 16715478 C-A Hetero INTERGENIC
SBS Chr8 23499338 C-T Hetero INTERGENIC
SBS Chr9 238323 G-C Homo INTERGENIC
SBS Chr9 5651636 G-A Hetero INTERGENIC
SBS Chr9 8953034 A-G Hetero INTERGENIC
SBS Chr10 3293489 C-T Hetero INTERGENIC
SBS Chr10 10317495 A-G Hetero INTERGENIC
SBS Chr11 26346780 C-T Homo INTRON
SBS Chr12 3919127 C-A Hetero INTERGENIC
SBS Chr12 12738241 C-T Hetero INTERGENIC
SBS Chr12 16790352 T-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2187482 2187487 5
Deletion Chr6 5902907 5902908 1
Deletion Chr8 6294387 6294393 6
Deletion Chr10 7793192 7793195 3
Deletion Chr9 8175494 8175495 1
Deletion Chr3 9823099 9823100 1 OsKitaake03g133800
Deletion Chr9 10027242 10027244 2
Deletion Chr7 11235986 11235987 1
Deletion Chr8 14544244 14544246 2
Deletion Chr6 14886843 14886860 17
Deletion Chr3 15771242 15771247 5
Deletion Chr3 16016790 16016802 12
Deletion Chr3 16306241 16306243 2
Deletion Chr2 22272655 22272665 10
Deletion Chr11 22294526 22294535 9
Deletion Chr8 22540551 22540552 1
Deletion Chr2 23212219 23212221 2
Deletion Chr12 25187183 25187221 38
Deletion Chr5 26361358 26361359 1
Deletion Chr4 27464273 27464274 1
Deletion Chr2 35153938 35153939 1
Deletion Chr2 36055770 36055777 7
Deletion Chr4 36061977 36061979 2 OsKitaake04g310500
Deletion Chr3 36721217 36721218 1 OsKitaake03g408900

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27305047 27305050 2
Insertion Chr3 2094552 2094554 1 OsKitaake03g029800
Insertion Chr7 27533966 27533971 4
Insertion Chr9 1508841 1508843 1
Insertion Chr10 2659543 2659545 1
Insertion Chr12 24350746 24350751 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 11281296 11733430 OsKitaake07g105801

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 17207244 Chr6 4200511 OsKitaake06g058200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1173256	G-A	Hetero	INTERGENIC
SBS	Chr1	4259190	T-G	Hetero	INTRON
SBS	Chr1	13883562	C-T	Homo	INTERGENIC
SBS	Chr1	34866211	C-T	Hetero	INTERGENIC
SBS	Chr1	39767711	A-T	Hetero	INTERGENIC
SBS	Chr2	4656031	A-G	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	16253454	T-A	Homo	INTERGENIC
SBS	Chr2	27343014	T-G	Homo	INTERGENIC
SBS	Chr3	1666536	T-A	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	3084198	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr3	3745389	A-G	Hetero	INTERGENIC
SBS	Chr3	16664018	G-A	Hetero	INTERGENIC
SBS	Chr3	17244140	G-T	Homo	INTERGENIC
SBS	Chr3	24357396	G-A	Hetero	INTERGENIC
SBS	Chr3	26490432	C-T	Hetero	INTERGENIC
SBS	Chr4	2882288	G-T	Homo	INTERGENIC
SBS	Chr4	2882289	C-T	Homo	INTERGENIC
SBS	Chr4	3497267	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g017300
SBS	Chr4	18554439	G-A	Hetero	INTRON
SBS	Chr4	25665409	G-A	Homo	INTERGENIC
SBS	Chr4	31487526	C-T	Hetero	INTERGENIC
SBS	Chr5	11188794	C-T	Hetero	INTERGENIC
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr5	23252568	C-T	Hetero	INTERGENIC
SBS	Chr5	28352939	T-C	Hetero	INTERGENIC
SBS	Chr6	3724063	T-A	Hetero	INTERGENIC
SBS	Chr6	11532419	C-T	Hetero	INTERGENIC
SBS	Chr6	23985907	C-T	Hetero	INTERGENIC
SBS	Chr7	19542745	T-A	Hetero	INTERGENIC
SBS	Chr7	21486408	A-C	Homo	INTERGENIC
SBS	Chr8	2806400	G-A	Homo	UTR_5_PRIME
SBS	Chr8	5289616	G-A	Hetero	INTERGENIC
SBS	Chr8	14092609	C-T	Hetero	INTERGENIC
SBS	Chr8	14733999	C-A	Hetero	INTERGENIC
SBS	Chr8	14960830	G-C	Hetero	INTERGENIC
SBS	Chr8	16715478	C-A	Hetero	INTERGENIC
SBS	Chr8	23499338	C-T	Hetero	INTERGENIC
SBS	Chr9	238323	G-C	Homo	INTERGENIC
SBS	Chr9	5651636	G-A	Hetero	INTERGENIC
SBS	Chr9	8953034	A-G	Hetero	INTERGENIC
SBS	Chr10	3293489	C-T	Hetero	INTERGENIC
SBS	Chr10	10317495	A-G	Hetero	INTERGENIC
SBS	Chr11	26346780	C-T	Homo	INTRON
SBS	Chr12	3919127	C-A	Hetero	INTERGENIC
SBS	Chr12	12738241	C-T	Hetero	INTERGENIC
SBS	Chr12	16790352	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2187482	2187487	5
Deletion	Chr6	5902907	5902908	1
Deletion	Chr8	6294387	6294393	6
Deletion	Chr10	7793192	7793195	3
Deletion	Chr9	8175494	8175495	1
Deletion	Chr3	9823099	9823100	1	OsKitaake03g133800
Deletion	Chr9	10027242	10027244	2
Deletion	Chr7	11235986	11235987	1
Deletion	Chr8	14544244	14544246	2
Deletion	Chr6	14886843	14886860	17
Deletion	Chr3	15771242	15771247	5
Deletion	Chr3	16016790	16016802	12
Deletion	Chr3	16306241	16306243	2
Deletion	Chr2	22272655	22272665	10
Deletion	Chr11	22294526	22294535	9
Deletion	Chr8	22540551	22540552	1
Deletion	Chr2	23212219	23212221	2
Deletion	Chr12	25187183	25187221	38
Deletion	Chr5	26361358	26361359	1
Deletion	Chr4	27464273	27464274	1
Deletion	Chr2	35153938	35153939	1
Deletion	Chr2	36055770	36055777	7
Deletion	Chr4	36061977	36061979	2	OsKitaake04g310500
Deletion	Chr3	36721217	36721218	1	OsKitaake03g408900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	11281296	11733430	OsKitaake07g105801

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes