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Mutant Information

Mutant Name	FN3377-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3377-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 14572605 G-A Hetero INTERGENIC
SBS Chr2 26508306 G-A Hetero INTERGENIC
SBS Chr2 35021617 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g365900
SBS Chr3 4226211 T-C Hetero INTRON
SBS Chr3 15585163 C-T Hetero INTERGENIC
SBS Chr3 18942539 C-G Hetero INTERGENIC
SBS Chr3 37240926 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g417300
SBS Chr4 16568731 G-T Hetero INTRON
SBS Chr5 8615684 C-T Hetero INTERGENIC
SBS Chr5 8663555 T-A Hetero INTERGENIC
SBS Chr5 17261854 A-T Hetero INTERGENIC
SBS Chr5 22805228 T-C Hetero INTERGENIC
SBS Chr5 24526845 G-A Hetero INTERGENIC
SBS Chr6 16557598 G-A Hetero INTERGENIC
SBS Chr6 26079824 T-C Hetero INTERGENIC
SBS Chr7 13004687 T-A Hetero INTERGENIC
SBS Chr7 28368335 G-A Hetero INTERGENIC
SBS Chr9 1094640 G-T Homo INTERGENIC
SBS Chr9 14815358 G-A Hetero INTERGENIC
SBS Chr10 9483577 C-G Hetero INTERGENIC
SBS Chr10 23561820 G-T Hetero INTRON
SBS Chr12 7224348 A-T Hetero INTERGENIC
SBS Chr12 24463139 T-A Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1094013 1094017 4
Deletion Chr5 12515860 12515861 1
Deletion Chr11 24912256 24912258 2
Deletion Chr5 25685001 25706000 20999 4
Deletion Chr1 25891882 25891883 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23549922 23549926 3
Insertion Chr4 28242465 28242468 2
Insertion Chr5 16168465 16168468 2
Insertion Chr7 18398048 18398051 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11110024 12027526 OsKitaake03g163500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	14572605	G-A	Hetero	INTERGENIC
SBS	Chr2	26508306	G-A	Hetero	INTERGENIC
SBS	Chr2	35021617	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g365900
SBS	Chr3	4226211	T-C	Hetero	INTRON
SBS	Chr3	15585163	C-T	Hetero	INTERGENIC
SBS	Chr3	18942539	C-G	Hetero	INTERGENIC
SBS	Chr3	37240926	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g417300
SBS	Chr4	16568731	G-T	Hetero	INTRON
SBS	Chr5	8615684	C-T	Hetero	INTERGENIC
SBS	Chr5	8663555	T-A	Hetero	INTERGENIC
SBS	Chr5	17261854	A-T	Hetero	INTERGENIC
SBS	Chr5	22805228	T-C	Hetero	INTERGENIC
SBS	Chr5	24526845	G-A	Hetero	INTERGENIC
SBS	Chr6	16557598	G-A	Hetero	INTERGENIC
SBS	Chr6	26079824	T-C	Hetero	INTERGENIC
SBS	Chr7	13004687	T-A	Hetero	INTERGENIC
SBS	Chr7	28368335	G-A	Hetero	INTERGENIC
SBS	Chr9	1094640	G-T	Homo	INTERGENIC
SBS	Chr9	14815358	G-A	Hetero	INTERGENIC
SBS	Chr10	9483577	C-G	Hetero	INTERGENIC
SBS	Chr10	23561820	G-T	Hetero	INTRON
SBS	Chr12	7224348	A-T	Hetero	INTERGENIC
SBS	Chr12	24463139	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1094013	1094017	4
Deletion	Chr5	12515860	12515861	1
Deletion	Chr11	24912256	24912258	2
Deletion	Chr5	25685001	25706000	20999	4
Deletion	Chr1	25891882	25891883	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11110024	12027526	OsKitaake03g163500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes