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Mutant Information

Mutant Name	FN3378-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3378-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11491410 G-A Hetero INTERGENIC
SBS Chr1 13393015 A-G Hetero INTERGENIC
SBS Chr1 13708342 G-A Hetero INTRON
SBS Chr1 22676145 A-G Hetero INTERGENIC
SBS Chr1 27403660 G-T Hetero INTERGENIC
SBS Chr1 38020622 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 42809017 G-C Homo INTRON
SBS Chr2 11390321 A-T Hetero INTRON
SBS Chr2 11390322 G-T Hetero INTRON
SBS Chr2 12605009 G-A Hetero INTERGENIC
SBS Chr2 19904628 A-G Homo INTRON
SBS Chr2 21075285 G-A Homo INTRON
SBS Chr2 26145280 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g258900
SBS Chr3 20256866 G-T Hetero INTERGENIC
SBS Chr3 20256867 T-G Hetero INTERGENIC
SBS Chr4 3361001 A-T Homo INTERGENIC
SBS Chr4 6062554 C-T Hetero INTERGENIC
SBS Chr4 18645651 C-T Homo INTERGENIC
SBS Chr5 7319365 C-T Hetero INTERGENIC
SBS Chr5 12899402 T-C Hetero INTERGENIC
SBS Chr6 172692 C-T Homo INTRON
SBS Chr6 9969467 C-G Homo INTERGENIC
SBS Chr7 14675228 T-C Homo INTERGENIC
SBS Chr7 20827585 C-T Hetero INTERGENIC
SBS Chr7 22249999 C-G Hetero INTERGENIC
SBS Chr8 2605541 A-G Homo INTERGENIC
SBS Chr10 10744423 T-A Homo INTERGENIC
SBS Chr10 20874542 A-T Homo INTERGENIC
SBS Chr11 3676298 C-T Hetero INTERGENIC
SBS Chr11 18793910 G-A Hetero INTRON
SBS Chr11 19911877 G-A Homo INTERGENIC
SBS Chr12 11098188 G-C Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2246363 2246370 7
Deletion Chr7 4098564 4098568 4
Deletion Chr2 6077171 6077172 1
Deletion Chr11 11452472 11452487 15
Deletion Chr8 11614001 11749000 134999 6
Deletion Chr1 13460001 13470000 9999 OsKitaake01g156600
Deletion Chr7 14057334 14057343 9
Deletion Chr11 16753374 16753380 6
Deletion Chr3 17814172 17814182 10
Deletion Chr10 19752324 19752326 2
Deletion Chr10 21636756 21636786 30
Deletion Chr10 21657511 21657512 1
Deletion Chr7 22543001 22583000 39999 8
Deletion Chr1 22675158 22675162 4
Deletion Chr8 23079867 23079877 10
Deletion Chr1 23256001 23269000 12999 OsKitaake01g222400
Deletion Chr8 23307766 23307775 9
Deletion Chr6 26268946 26268963 17
Deletion Chr1 42663181 42663190 9
Deletion Chr1 42730071 42730073 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 32967285 32967291 5
Insertion Chr5 29483063 29483066 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 408614 409556 OsKitaake03g006000
Inversion Chr8 5210753 5378839 2
Inversion Chr8 5212305 5378843 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 408612 Chr2 12745365 OsKitaake02g142400
Translocation Chr3 409536 Chr2 12745361 2
Translocation Chr3 409935 Chr2 12745365 2
Translocation Chr8 3262411 Chr5 28505981 OsKitaake08g036600
Translocation Chr8 5101389 Chr1 1945593 OsKitaake01g023400
Translocation Chr9 9480505 Chr1 1945569 2
Translocation Chr9 9480987 Chr8 5101606 OsKitaake09g057400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11491410	G-A	Hetero	INTERGENIC
SBS	Chr1	13393015	A-G	Hetero	INTERGENIC
SBS	Chr1	13708342	G-A	Hetero	INTRON
SBS	Chr1	22676145	A-G	Hetero	INTERGENIC
SBS	Chr1	27403660	G-T	Hetero	INTERGENIC
SBS	Chr1	38020622	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	42809017	G-C	Homo	INTRON
SBS	Chr2	11390321	A-T	Hetero	INTRON
SBS	Chr2	11390322	G-T	Hetero	INTRON
SBS	Chr2	12605009	G-A	Hetero	INTERGENIC
SBS	Chr2	19904628	A-G	Homo	INTRON
SBS	Chr2	21075285	G-A	Homo	INTRON
SBS	Chr2	26145280	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g258900
SBS	Chr3	20256866	G-T	Hetero	INTERGENIC
SBS	Chr3	20256867	T-G	Hetero	INTERGENIC
SBS	Chr4	3361001	A-T	Homo	INTERGENIC
SBS	Chr4	6062554	C-T	Hetero	INTERGENIC
SBS	Chr4	18645651	C-T	Homo	INTERGENIC
SBS	Chr5	7319365	C-T	Hetero	INTERGENIC
SBS	Chr5	12899402	T-C	Hetero	INTERGENIC
SBS	Chr6	172692	C-T	Homo	INTRON
SBS	Chr6	9969467	C-G	Homo	INTERGENIC
SBS	Chr7	14675228	T-C	Homo	INTERGENIC
SBS	Chr7	20827585	C-T	Hetero	INTERGENIC
SBS	Chr7	22249999	C-G	Hetero	INTERGENIC
SBS	Chr8	2605541	A-G	Homo	INTERGENIC
SBS	Chr10	10744423	T-A	Homo	INTERGENIC
SBS	Chr10	20874542	A-T	Homo	INTERGENIC
SBS	Chr11	3676298	C-T	Hetero	INTERGENIC
SBS	Chr11	18793910	G-A	Hetero	INTRON
SBS	Chr11	19911877	G-A	Homo	INTERGENIC
SBS	Chr12	11098188	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2246363	2246370	7
Deletion	Chr7	4098564	4098568	4
Deletion	Chr2	6077171	6077172	1
Deletion	Chr11	11452472	11452487	15
Deletion	Chr8	11614001	11749000	134999	6
Deletion	Chr1	13460001	13470000	9999	OsKitaake01g156600
Deletion	Chr7	14057334	14057343	9
Deletion	Chr11	16753374	16753380	6
Deletion	Chr3	17814172	17814182	10
Deletion	Chr10	19752324	19752326	2
Deletion	Chr10	21636756	21636786	30
Deletion	Chr10	21657511	21657512	1
Deletion	Chr7	22543001	22583000	39999	8
Deletion	Chr1	22675158	22675162	4
Deletion	Chr8	23079867	23079877	10
Deletion	Chr1	23256001	23269000	12999	OsKitaake01g222400
Deletion	Chr8	23307766	23307775	9
Deletion	Chr6	26268946	26268963	17
Deletion	Chr1	42663181	42663190	9
Deletion	Chr1	42730071	42730073	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	408614	409556	OsKitaake03g006000
Inversion	Chr8	5210753	5378839	2
Inversion	Chr8	5212305	5378843	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes