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Mutant Information

Mutant Name	FN3380-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3380-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7486044 A-T Hetero INTERGENIC
SBS Chr1 10638122 G-A Hetero INTERGENIC
SBS Chr2 3145965 T-A Hetero INTERGENIC
SBS Chr2 22806448 A-C Hetero START_LOST OsKitaake02g221800
SBS Chr2 29770139 C-T Hetero INTERGENIC
SBS Chr2 31282385 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g320600
SBS Chr2 31282386 G-C Hetero SYNONYMOUS_CODING
SBS Chr3 9091652 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 12828694 C-T Homo INTRON
SBS Chr3 15239520 A-G Hetero INTERGENIC
SBS Chr3 28538541 T-G Homo UTR_3_PRIME
SBS Chr3 35005437 G-C Hetero INTERGENIC
SBS Chr4 12783636 G-A Homo INTRON
SBS Chr4 14215169 G-T Homo INTERGENIC
SBS Chr4 16479667 G-T Hetero INTERGENIC
SBS Chr4 17075216 T-C Homo INTRON
SBS Chr4 26706237 G-A Hetero INTERGENIC
SBS Chr4 29991579 G-T Hetero INTERGENIC
SBS Chr4 29991582 G-T Hetero INTERGENIC
SBS Chr4 32223253 A-G Hetero INTRON
SBS Chr5 4643466 A-T Hetero INTERGENIC
SBS Chr5 12441497 C-T Hetero INTERGENIC
SBS Chr5 25912930 A-T Hetero INTRON
SBS Chr6 1089705 G-C Hetero SYNONYMOUS_CODING
SBS Chr6 16888766 C-A Hetero INTERGENIC
SBS Chr6 16889485 A-T Hetero INTERGENIC
SBS Chr6 16889486 G-T Hetero INTERGENIC
SBS Chr6 17969950 C-T Hetero INTERGENIC
SBS Chr7 27363 C-T Hetero INTERGENIC
SBS Chr7 190436 T-C Hetero INTERGENIC
SBS Chr7 324974 T-A Hetero INTERGENIC
SBS Chr7 6644014 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 19912186 A-G Hetero INTERGENIC
SBS Chr8 10819449 G-A Hetero INTERGENIC
SBS Chr8 17124521 A-C Hetero INTERGENIC
SBS Chr8 21894462 T-A Hetero INTERGENIC
SBS Chr9 20064261 G-T Homo INTERGENIC
SBS Chr10 1244575 A-G Homo INTRON
SBS Chr10 19283528 G-A Hetero INTRON
SBS Chr11 10098358 C-T Hetero INTERGENIC
SBS Chr12 5771329 T-C Hetero INTERGENIC
SBS Chr12 9763352 A-G Hetero INTERGENIC
SBS Chr12 16422312 C-T Hetero INTERGENIC
SBS Chr12 22124095 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2031873 2031875 2
Deletion Chr5 2865967 2865968 1 OsKitaake05g032900
Deletion Chr10 13751630 13751632 2
Deletion Chr3 17704531 17704538 7
Deletion Chr4 18250823 18250830 7
Deletion Chr3 19606001 19977000 370999 16
Deletion Chr9 20580553 20580566 13 OsKitaake09g174200
Deletion Chr3 30730933 30730934 1
Deletion Chr4 33628188 33628189 1
Deletion Chr1 35011139 35011145 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13171887 13171890 2
Insertion Chr3 10696522 10696525 2
Insertion Chr5 20827229 20827232 2
Insertion Chr11 10377915 10377918 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 17964411 18435016 OsKitaake12g131900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 16634486 Chr6 18107605
Translocation Chr6 18107606 Chr2 35656306 OsKitaake02g375000
Translocation Chr6 18108309 Chr2 35656313 OsKitaake02g375000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7486044	A-T	Hetero	INTERGENIC
SBS	Chr1	10638122	G-A	Hetero	INTERGENIC
SBS	Chr2	3145965	T-A	Hetero	INTERGENIC
SBS	Chr2	22806448	A-C	Hetero	START_LOST	OsKitaake02g221800
SBS	Chr2	29770139	C-T	Hetero	INTERGENIC
SBS	Chr2	31282385	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g320600
SBS	Chr2	31282386	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9091652	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	12828694	C-T	Homo	INTRON
SBS	Chr3	15239520	A-G	Hetero	INTERGENIC
SBS	Chr3	28538541	T-G	Homo	UTR_3_PRIME
SBS	Chr3	35005437	G-C	Hetero	INTERGENIC
SBS	Chr4	12783636	G-A	Homo	INTRON
SBS	Chr4	14215169	G-T	Homo	INTERGENIC
SBS	Chr4	16479667	G-T	Hetero	INTERGENIC
SBS	Chr4	17075216	T-C	Homo	INTRON
SBS	Chr4	26706237	G-A	Hetero	INTERGENIC
SBS	Chr4	29991579	G-T	Hetero	INTERGENIC
SBS	Chr4	29991582	G-T	Hetero	INTERGENIC
SBS	Chr4	32223253	A-G	Hetero	INTRON
SBS	Chr5	4643466	A-T	Hetero	INTERGENIC
SBS	Chr5	12441497	C-T	Hetero	INTERGENIC
SBS	Chr5	25912930	A-T	Hetero	INTRON
SBS	Chr6	1089705	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	16888766	C-A	Hetero	INTERGENIC
SBS	Chr6	16889485	A-T	Hetero	INTERGENIC
SBS	Chr6	16889486	G-T	Hetero	INTERGENIC
SBS	Chr6	17969950	C-T	Hetero	INTERGENIC
SBS	Chr7	27363	C-T	Hetero	INTERGENIC
SBS	Chr7	190436	T-C	Hetero	INTERGENIC
SBS	Chr7	324974	T-A	Hetero	INTERGENIC
SBS	Chr7	6644014	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	19912186	A-G	Hetero	INTERGENIC
SBS	Chr8	10819449	G-A	Hetero	INTERGENIC
SBS	Chr8	17124521	A-C	Hetero	INTERGENIC
SBS	Chr8	21894462	T-A	Hetero	INTERGENIC
SBS	Chr9	20064261	G-T	Homo	INTERGENIC
SBS	Chr10	1244575	A-G	Homo	INTRON
SBS	Chr10	19283528	G-A	Hetero	INTRON
SBS	Chr11	10098358	C-T	Hetero	INTERGENIC
SBS	Chr12	5771329	T-C	Hetero	INTERGENIC
SBS	Chr12	9763352	A-G	Hetero	INTERGENIC
SBS	Chr12	16422312	C-T	Hetero	INTERGENIC
SBS	Chr12	22124095	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2031873	2031875	2
Deletion	Chr5	2865967	2865968	1	OsKitaake05g032900
Deletion	Chr10	13751630	13751632	2
Deletion	Chr3	17704531	17704538	7
Deletion	Chr4	18250823	18250830	7
Deletion	Chr3	19606001	19977000	370999	16
Deletion	Chr9	20580553	20580566	13	OsKitaake09g174200
Deletion	Chr3	30730933	30730934	1
Deletion	Chr4	33628188	33628189	1
Deletion	Chr1	35011139	35011145	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	17964411	18435016	OsKitaake12g131900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes