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Mutant Information

Mutant Name	FN3381-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3381-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6209795 A-G Hetero INTERGENIC
SBS Chr1 20051746 A-G Hetero INTERGENIC
SBS Chr2 9850994 G-A Hetero INTERGENIC
SBS Chr2 15914900 A-G Homo UTR_3_PRIME
SBS Chr3 2716762 T-C Hetero INTERGENIC
SBS Chr3 13323083 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 24784373 A-G Hetero INTERGENIC
SBS Chr4 2610377 T-G Homo INTERGENIC
SBS Chr4 15187825 T-C Hetero INTERGENIC
SBS Chr4 21072566 C-T Homo INTERGENIC
SBS Chr4 21072567 C-T Homo INTERGENIC
SBS Chr5 1240807 G-C Hetero INTERGENIC
SBS Chr5 7855142 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g078100
SBS Chr5 20999418 C-T Homo INTERGENIC
SBS Chr6 21211474 G-A Hetero INTERGENIC
SBS Chr7 5643956 A-T Hetero INTERGENIC
SBS Chr7 9727757 C-T Homo INTERGENIC
SBS Chr7 17056719 C-G Hetero INTERGENIC
SBS Chr8 4112864 G-A Hetero INTERGENIC
SBS Chr8 6639563 T-A Hetero INTERGENIC
SBS Chr8 6639564 C-A Hetero INTERGENIC
SBS Chr8 14256441 G-C Hetero UTR_5_PRIME
SBS Chr9 5695075 C-T Hetero INTERGENIC
SBS Chr9 6156790 A-T Hetero INTERGENIC
SBS Chr9 13871612 G-A Hetero INTERGENIC
SBS Chr10 1042950 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g007600
SBS Chr10 13498565 G-C Hetero INTRON
SBS Chr10 13498567 A-T Hetero INTRON
SBS Chr10 13896177 G-A Hetero INTERGENIC
SBS Chr10 19213537 C-T Hetero INTERGENIC
SBS Chr11 3962101 G-A Hetero INTERGENIC
SBS Chr11 9664743 C-T Hetero INTERGENIC
SBS Chr11 10421200 T-A Hetero INTRON
SBS Chr11 25819607 C-T Hetero INTERGENIC
SBS Chr12 2379662 C-T Hetero INTRON
SBS Chr12 10415242 C-T Homo INTRON
SBS Chr12 12342787 A-C Hetero INTERGENIC
SBS Chr12 24084795 G-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 855285 855290 5
Deletion Chr4 1540895 1540909 14
Deletion Chr6 2803880 2803896 16
Deletion Chr6 3295898 3295899 1
Deletion Chr2 4076587 4076597 10
Deletion Chr3 8578741 8578742 1
Deletion Chr8 9025001 9061000 35999 2
Deletion Chr12 10103934 10103949 15
Deletion Chr12 10596599 10596601 2
Deletion Chr6 10857068 10857082 14
Deletion Chr3 11619249 11619251 2
Deletion Chr6 12108001 12202000 93999 3
Deletion Chr8 14669092 14669102 10
Deletion Chr7 15308232 15308237 5
Deletion Chr4 17059714 17059747 33
Deletion Chr3 19944227 19944233 6
Deletion Chr6 22128896 22128897 1 OsKitaake06g194500
Deletion Chr2 22652028 22652032 4
Deletion Chr1 23200920 23200926 6
Deletion Chr10 23574821 23574838 17
Deletion Chr11 26218327 26218328 1
Deletion Chr2 36337886 36337887 1
Deletion Chr1 41101151 41101160 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15611129 15611133 3
Insertion Chr5 2435481 2435484 2
Insertion Chr6 29213274 29213277 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 17833472 18318255 OsKitaake11g142400
Inversion Chr11 17833476 18319691 OsKitaake11g142500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 17026037 Chr3 1078552

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6209795	A-G	Hetero	INTERGENIC
SBS	Chr1	20051746	A-G	Hetero	INTERGENIC
SBS	Chr2	9850994	G-A	Hetero	INTERGENIC
SBS	Chr2	15914900	A-G	Homo	UTR_3_PRIME
SBS	Chr3	2716762	T-C	Hetero	INTERGENIC
SBS	Chr3	13323083	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	24784373	A-G	Hetero	INTERGENIC
SBS	Chr4	2610377	T-G	Homo	INTERGENIC
SBS	Chr4	15187825	T-C	Hetero	INTERGENIC
SBS	Chr4	21072566	C-T	Homo	INTERGENIC
SBS	Chr4	21072567	C-T	Homo	INTERGENIC
SBS	Chr5	1240807	G-C	Hetero	INTERGENIC
SBS	Chr5	7855142	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g078100
SBS	Chr5	20999418	C-T	Homo	INTERGENIC
SBS	Chr6	21211474	G-A	Hetero	INTERGENIC
SBS	Chr7	5643956	A-T	Hetero	INTERGENIC
SBS	Chr7	9727757	C-T	Homo	INTERGENIC
SBS	Chr7	17056719	C-G	Hetero	INTERGENIC
SBS	Chr8	4112864	G-A	Hetero	INTERGENIC
SBS	Chr8	6639563	T-A	Hetero	INTERGENIC
SBS	Chr8	6639564	C-A	Hetero	INTERGENIC
SBS	Chr8	14256441	G-C	Hetero	UTR_5_PRIME
SBS	Chr9	5695075	C-T	Hetero	INTERGENIC
SBS	Chr9	6156790	A-T	Hetero	INTERGENIC
SBS	Chr9	13871612	G-A	Hetero	INTERGENIC
SBS	Chr10	1042950	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g007600
SBS	Chr10	13498565	G-C	Hetero	INTRON
SBS	Chr10	13498567	A-T	Hetero	INTRON
SBS	Chr10	13896177	G-A	Hetero	INTERGENIC
SBS	Chr10	19213537	C-T	Hetero	INTERGENIC
SBS	Chr11	3962101	G-A	Hetero	INTERGENIC
SBS	Chr11	9664743	C-T	Hetero	INTERGENIC
SBS	Chr11	10421200	T-A	Hetero	INTRON
SBS	Chr11	25819607	C-T	Hetero	INTERGENIC
SBS	Chr12	2379662	C-T	Hetero	INTRON
SBS	Chr12	10415242	C-T	Homo	INTRON
SBS	Chr12	12342787	A-C	Hetero	INTERGENIC
SBS	Chr12	24084795	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	855285	855290	5
Deletion	Chr4	1540895	1540909	14
Deletion	Chr6	2803880	2803896	16
Deletion	Chr6	3295898	3295899	1
Deletion	Chr2	4076587	4076597	10
Deletion	Chr3	8578741	8578742	1
Deletion	Chr8	9025001	9061000	35999	2
Deletion	Chr12	10103934	10103949	15
Deletion	Chr12	10596599	10596601	2
Deletion	Chr6	10857068	10857082	14
Deletion	Chr3	11619249	11619251	2
Deletion	Chr6	12108001	12202000	93999	3
Deletion	Chr8	14669092	14669102	10
Deletion	Chr7	15308232	15308237	5
Deletion	Chr4	17059714	17059747	33
Deletion	Chr3	19944227	19944233	6
Deletion	Chr6	22128896	22128897	1	OsKitaake06g194500
Deletion	Chr2	22652028	22652032	4
Deletion	Chr1	23200920	23200926	6
Deletion	Chr10	23574821	23574838	17
Deletion	Chr11	26218327	26218328	1
Deletion	Chr2	36337886	36337887	1
Deletion	Chr1	41101151	41101160	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	17833472	18318255	OsKitaake11g142400
Inversion	Chr11	17833476	18319691	OsKitaake11g142500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes