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Mutant Information

Mutant Name	FN3382-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3382-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 59

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3001861 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g037900
SBS Chr1 21020830 G-T Homo INTERGENIC
SBS Chr1 33036779 C-T Hetero INTERGENIC
SBS Chr1 39113176 C-T Hetero INTERGENIC
SBS Chr1 43407020 A-T Hetero SYNONYMOUS_CODING
SBS Chr1 43407021 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g480500
SBS Chr1 43495947 G-A Hetero UTR_3_PRIME
SBS Chr2 13559529 G-A Homo INTERGENIC
SBS Chr2 24462743 A-G Hetero INTERGENIC
SBS Chr3 6682562 G-T Hetero INTERGENIC
SBS Chr3 8364019 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g115100
SBS Chr3 13659240 G-A Hetero INTERGENIC
SBS Chr3 25759668 T-A Hetero UTR_5_PRIME
SBS Chr3 27008757 G-A Hetero INTERGENIC
SBS Chr3 27452408 G-C Hetero INTERGENIC
SBS Chr3 35633097 T-C Hetero UTR_5_PRIME
SBS Chr3 37583624 C-T Homo INTERGENIC
SBS Chr4 11193129 G-T Homo INTERGENIC
SBS Chr4 11193130 C-T Homo INTERGENIC
SBS Chr4 11193131 G-T Homo INTERGENIC
SBS Chr4 12272167 C-A Hetero INTERGENIC
SBS Chr4 18739385 A-G Hetero INTERGENIC
SBS Chr4 21629743 G-T Hetero INTERGENIC
SBS Chr4 30518092 G-A Homo INTERGENIC
SBS Chr5 142422 G-T Homo INTERGENIC
SBS Chr5 8305026 C-T Hetero UTR_3_PRIME
SBS Chr5 8363522 G-A Hetero INTERGENIC
SBS Chr5 14121396 T-A Hetero INTERGENIC
SBS Chr5 20974472 T-A Homo INTERGENIC
SBS Chr5 20974473 T-A Homo INTERGENIC
SBS Chr5 21807299 T-A Hetero UTR_3_PRIME
SBS Chr6 1019910 A-C Homo INTERGENIC
SBS Chr6 1106316 C-T Homo INTERGENIC
SBS Chr6 4372882 T-C Hetero UTR_5_PRIME
SBS Chr6 4879269 T-C Hetero INTRON
SBS Chr6 11168470 A-T Hetero INTERGENIC
SBS Chr6 18604433 G-A Hetero INTERGENIC
SBS Chr6 20938780 T-C Hetero INTERGENIC
SBS Chr6 20938781 T-C Hetero INTERGENIC
SBS Chr6 21686982 T-A Hetero INTERGENIC
SBS Chr6 21686983 T-A Hetero INTERGENIC
SBS Chr6 22465646 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g197400
SBS Chr7 12561268 T-A Hetero UTR_5_PRIME
SBS Chr7 29447346 C-G Hetero INTERGENIC
SBS Chr8 11135872 C-T Hetero INTERGENIC
SBS Chr8 11184036 A-T Hetero INTERGENIC
SBS Chr8 11184037 A-T Hetero INTERGENIC
SBS Chr8 16356874 T-A Homo INTERGENIC
SBS Chr8 18642726 T-C Homo INTERGENIC
SBS Chr9 3248984 G-A Homo INTERGENIC
SBS Chr9 3782815 C-T Homo INTERGENIC
SBS Chr9 6269598 C-T Hetero INTERGENIC
SBS Chr9 18788812 G-A Hetero INTERGENIC
SBS Chr10 6118763 A-G Homo INTERGENIC
SBS Chr10 21512029 G-C Homo INTERGENIC
SBS Chr11 6876446 G-A Hetero INTERGENIC
SBS Chr11 12786634 T-A Hetero INTERGENIC
SBS Chr11 17043058 G-A Hetero INTRON
SBS Chr12 18389222 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1106567 1106572 5
Deletion Chr5 2494354 2494368 14
Deletion Chr9 2952262 2952263 1
Deletion Chr2 3901354 3901356 2
Deletion Chr12 4763085 4763092 7
Deletion Chr8 7225760 7225762 2 OsKitaake08g069621
Deletion Chr1 9859685 9859686 1
Deletion Chr5 11419813 11419816 3
Deletion Chr1 16002242 16002258 16
Deletion Chr9 19027828 19027830 2
Deletion Chr2 23274752 23274753 1
Deletion Chr1 25109115 25109117 2
Deletion Chr4 30523553 30523568 15
Deletion Chr1 41158001 41176000 17999 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 7481611 7481614 2
Insertion Chr7 19307158 19307161 2
Insertion Chr7 23450585 23450587 1
Insertion Chr7 29596810 29596813 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1512120 1516187 OsKitaake10g010500
Inversion Chr10 1512148 1516191 OsKitaake10g010500

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 1022583 Chr1 9763099
Translocation Chr10 21973307 Chr1 9751996 OsKitaake10g177700
Translocation Chr9 22469367 Chr7 22298296
Translocation Chr9 22470075 Chr7 22298293

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3001861	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g037900
SBS	Chr1	21020830	G-T	Homo	INTERGENIC
SBS	Chr1	33036779	C-T	Hetero	INTERGENIC
SBS	Chr1	39113176	C-T	Hetero	INTERGENIC
SBS	Chr1	43407020	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	43407021	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g480500
SBS	Chr1	43495947	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	13559529	G-A	Homo	INTERGENIC
SBS	Chr2	24462743	A-G	Hetero	INTERGENIC
SBS	Chr3	6682562	G-T	Hetero	INTERGENIC
SBS	Chr3	8364019	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g115100
SBS	Chr3	13659240	G-A	Hetero	INTERGENIC
SBS	Chr3	25759668	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	27008757	G-A	Hetero	INTERGENIC
SBS	Chr3	27452408	G-C	Hetero	INTERGENIC
SBS	Chr3	35633097	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	37583624	C-T	Homo	INTERGENIC
SBS	Chr4	11193129	G-T	Homo	INTERGENIC
SBS	Chr4	11193130	C-T	Homo	INTERGENIC
SBS	Chr4	11193131	G-T	Homo	INTERGENIC
SBS	Chr4	12272167	C-A	Hetero	INTERGENIC
SBS	Chr4	18739385	A-G	Hetero	INTERGENIC
SBS	Chr4	21629743	G-T	Hetero	INTERGENIC
SBS	Chr4	30518092	G-A	Homo	INTERGENIC
SBS	Chr5	142422	G-T	Homo	INTERGENIC
SBS	Chr5	8305026	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	8363522	G-A	Hetero	INTERGENIC
SBS	Chr5	14121396	T-A	Hetero	INTERGENIC
SBS	Chr5	20974472	T-A	Homo	INTERGENIC
SBS	Chr5	20974473	T-A	Homo	INTERGENIC
SBS	Chr5	21807299	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	1019910	A-C	Homo	INTERGENIC
SBS	Chr6	1106316	C-T	Homo	INTERGENIC
SBS	Chr6	4372882	T-C	Hetero	UTR_5_PRIME
SBS	Chr6	4879269	T-C	Hetero	INTRON
SBS	Chr6	11168470	A-T	Hetero	INTERGENIC
SBS	Chr6	18604433	G-A	Hetero	INTERGENIC
SBS	Chr6	20938780	T-C	Hetero	INTERGENIC
SBS	Chr6	20938781	T-C	Hetero	INTERGENIC
SBS	Chr6	21686982	T-A	Hetero	INTERGENIC
SBS	Chr6	21686983	T-A	Hetero	INTERGENIC
SBS	Chr6	22465646	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g197400
SBS	Chr7	12561268	T-A	Hetero	UTR_5_PRIME
SBS	Chr7	29447346	C-G	Hetero	INTERGENIC
SBS	Chr8	11135872	C-T	Hetero	INTERGENIC
SBS	Chr8	11184036	A-T	Hetero	INTERGENIC
SBS	Chr8	11184037	A-T	Hetero	INTERGENIC
SBS	Chr8	16356874	T-A	Homo	INTERGENIC
SBS	Chr8	18642726	T-C	Homo	INTERGENIC
SBS	Chr9	3248984	G-A	Homo	INTERGENIC
SBS	Chr9	3782815	C-T	Homo	INTERGENIC
SBS	Chr9	6269598	C-T	Hetero	INTERGENIC
SBS	Chr9	18788812	G-A	Hetero	INTERGENIC
SBS	Chr10	6118763	A-G	Homo	INTERGENIC
SBS	Chr10	21512029	G-C	Homo	INTERGENIC
SBS	Chr11	6876446	G-A	Hetero	INTERGENIC
SBS	Chr11	12786634	T-A	Hetero	INTERGENIC
SBS	Chr11	17043058	G-A	Hetero	INTRON
SBS	Chr12	18389222	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1106567	1106572	5
Deletion	Chr5	2494354	2494368	14
Deletion	Chr9	2952262	2952263	1
Deletion	Chr2	3901354	3901356	2
Deletion	Chr12	4763085	4763092	7
Deletion	Chr8	7225760	7225762	2	OsKitaake08g069621
Deletion	Chr1	9859685	9859686	1
Deletion	Chr5	11419813	11419816	3
Deletion	Chr1	16002242	16002258	16
Deletion	Chr9	19027828	19027830	2
Deletion	Chr2	23274752	23274753	1
Deletion	Chr1	25109115	25109117	2
Deletion	Chr4	30523553	30523568	15
Deletion	Chr1	41158001	41176000	17999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1512120	1516187	OsKitaake10g010500
Inversion	Chr10	1512148	1516191	OsKitaake10g010500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes