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| Mutant Information |
|---|
| Mutant Name | FN3383-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3383-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 49
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26786732 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 34910253 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34910254 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 41879608 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41879642 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 42345433 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 42345434 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 4476372 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 25398533 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5238232 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 15160784 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 23226379 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 33078137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34042261 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9659636 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 32729443 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9236572 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10216356 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14107134 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 22534085 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 3445246 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 17766858 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23248862 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 23248864 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 23302743 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26666816 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9164877 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 11609184 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15735498 | T-A | Hetero | INTRON | |
| SBS | Chr10 | 9061482 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 16956867 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 17392790 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23726216 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 1427224 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 1774500 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 6236981 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 8309573 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13928355 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29515440 | G-T | Homo | UTR_5_PRIME | |
| SBS | Chr12 | 1824376 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6976575 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 10746294 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 14534285 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15658162 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18021229 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g132600 |
| SBS | Chr12 | 18346255 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18346256 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22799343 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g179900 |
| SBS | Chr12 | 25919118 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g214200 |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1475619 | 1475628 | 9 | |
| Deletion | Chr3 | 1622605 | 1622607 | 2 | |
| Deletion | Chr7 | 2806839 | 2806847 | 8 | |
| Deletion | Chr2 | 2807563 | 2807590 | 27 | |
| Deletion | Chr8 | 3630724 | 3630730 | 6 | |
| Deletion | Chr10 | 11127484 | 11127497 | 13 | |
| Deletion | Chr9 | 13238049 | 13238053 | 4 | |
| Deletion | Chr11 | 14798844 | 14798846 | 2 | |
| Deletion | Chr5 | 17152099 | 17152101 | 2 | |
| Deletion | Chr11 | 18731766 | 18731768 | 2 | |
| Deletion | Chr2 | 19884735 | 19884737 | 2 | |
| Deletion | Chr3 | 29105620 | 29105626 | 6 | OsKitaake03g302300 |
| Deletion | Chr1 | 29159405 | 29159406 | 1 | |
| Deletion | Chr1 | 41903623 | 41903624 | 1 | OsKitaake01g458900 |
| Deletion | Chr1 | 43938224 | 43938225 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 19083264 | 19083269 | 4 | |
| Insertion | Chr8 | 8240831 | 8240834 | 2 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 11981171 | 12417824 | OsKitaake03g167100 |
| Inversion | Chr3 | 11981183 | 12417996 | OsKitaake03g167100 |
| Inversion | Chr11 | 18800754 | 18880301 | 2 |
| Inversion | Chr11 | 18800761 | 18880303 | 2 |
| Inversion | Chr1 | 26784556 | 27075366 | |
| Inversion | Chr7 | 27978874 | 28367916 | OsKitaake07g268900 |
| Inversion | Chr7 | 27978880 | 28367930 | OsKitaake07g268900 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 16276674 | Chr1 | 26784165 | |
| Translocation | Chr5 | 16276680 | Chr1 | 26784556 |