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Mutant Information

Mutant Name	FN3384-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3384-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8894760 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g111100
SBS Chr1 17255023 T-G Hetero INTERGENIC
SBS Chr1 18720736 G-T Hetero INTERGENIC
SBS Chr1 24566632 A-C Hetero INTERGENIC
SBS Chr2 4484227 T-A Hetero INTRON
SBS Chr2 15234125 T-G Hetero INTERGENIC
SBS Chr3 35005281 G-A Hetero INTERGENIC
SBS Chr4 6917128 C-T Hetero INTERGENIC
SBS Chr4 13835039 T-A Hetero INTERGENIC
SBS Chr4 34524071 C-T Hetero INTERGENIC
SBS Chr5 108060 T-C Homo INTERGENIC
SBS Chr5 11114764 C-A Hetero INTERGENIC
SBS Chr5 29223745 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 8584876 A-C Homo INTERGENIC
SBS Chr6 14802407 G-A Hetero INTRON
SBS Chr6 30993743 A-C Hetero INTERGENIC
SBS Chr7 26067782 G-A Hetero INTERGENIC
SBS Chr8 28961873 C-A Homo INTERGENIC
SBS Chr9 5635095 G-A Hetero INTERGENIC
SBS Chr9 9915346 T-C Hetero INTERGENIC
SBS Chr9 10326333 T-G Hetero INTERGENIC
SBS Chr10 4837551 A-T Hetero INTERGENIC
SBS Chr10 4837557 A-T Hetero INTERGENIC
SBS Chr11 11351847 G-C Hetero INTERGENIC
SBS Chr11 20483072 G-A Homo INTERGENIC
SBS Chr11 21401079 G-T Hetero INTERGENIC
SBS Chr11 22789043 C-A Hetero INTRON
SBS Chr11 28971097 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 3807992 G-T Hetero INTERGENIC
SBS Chr12 15805476 A-T Homo INTERGENIC
SBS Chr12 16622595 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1685607 1685609 2
Deletion Chr4 2451001 2467000 15999
Deletion Chr4 14235618 14235620 2
Deletion Chr3 18081803 18081840 37
Deletion Chr3 18406360 18406366 6
Deletion Chr6 22687509 22687510 1
Deletion Chr2 25388001 25411000 22999 6
Deletion Chr3 29286059 29286060 1
Deletion Chr4 29401001 29508000 106999 21
Deletion Chr1 32190647 32190649 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26273050 26273053 2
Insertion Chr5 16272089 16272093 3
Insertion Chr5 17069072 17069076 3
Insertion Chr7 17400373 17400376 2
Insertion Chr10 11330784 11330787 2
Insertion Chr10 19292699 19292701 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8894760	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g111100
SBS	Chr1	17255023	T-G	Hetero	INTERGENIC
SBS	Chr1	18720736	G-T	Hetero	INTERGENIC
SBS	Chr1	24566632	A-C	Hetero	INTERGENIC
SBS	Chr2	4484227	T-A	Hetero	INTRON
SBS	Chr2	15234125	T-G	Hetero	INTERGENIC
SBS	Chr3	35005281	G-A	Hetero	INTERGENIC
SBS	Chr4	6917128	C-T	Hetero	INTERGENIC
SBS	Chr4	13835039	T-A	Hetero	INTERGENIC
SBS	Chr4	34524071	C-T	Hetero	INTERGENIC
SBS	Chr5	108060	T-C	Homo	INTERGENIC
SBS	Chr5	11114764	C-A	Hetero	INTERGENIC
SBS	Chr5	29223745	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	8584876	A-C	Homo	INTERGENIC
SBS	Chr6	14802407	G-A	Hetero	INTRON
SBS	Chr6	30993743	A-C	Hetero	INTERGENIC
SBS	Chr7	26067782	G-A	Hetero	INTERGENIC
SBS	Chr8	28961873	C-A	Homo	INTERGENIC
SBS	Chr9	5635095	G-A	Hetero	INTERGENIC
SBS	Chr9	9915346	T-C	Hetero	INTERGENIC
SBS	Chr9	10326333	T-G	Hetero	INTERGENIC
SBS	Chr10	4837551	A-T	Hetero	INTERGENIC
SBS	Chr10	4837557	A-T	Hetero	INTERGENIC
SBS	Chr11	11351847	G-C	Hetero	INTERGENIC
SBS	Chr11	20483072	G-A	Homo	INTERGENIC
SBS	Chr11	21401079	G-T	Hetero	INTERGENIC
SBS	Chr11	22789043	C-A	Hetero	INTRON
SBS	Chr11	28971097	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	3807992	G-T	Hetero	INTERGENIC
SBS	Chr12	15805476	A-T	Homo	INTERGENIC
SBS	Chr12	16622595	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1685607	1685609	2
Deletion	Chr4	2451001	2467000	15999
Deletion	Chr4	14235618	14235620	2
Deletion	Chr3	18081803	18081840	37
Deletion	Chr3	18406360	18406366	6
Deletion	Chr6	22687509	22687510	1
Deletion	Chr2	25388001	25411000	22999	6
Deletion	Chr3	29286059	29286060	1
Deletion	Chr4	29401001	29508000	106999	21
Deletion	Chr1	32190647	32190649	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes