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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN3385-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3385-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1627918 T-C Homo INTRON
SBS Chr1 6894215 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g086700
SBS Chr1 7166576 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 8112344 A-C Hetero INTERGENIC
SBS Chr1 19121466 G-A Homo INTRON
SBS Chr1 41193400 A-T Hetero INTERGENIC
SBS Chr2 1368602 G-T Homo INTRON
SBS Chr2 4835120 G-C Homo INTERGENIC
SBS Chr2 7306510 A-G Hetero INTERGENIC
SBS Chr2 14326208 T-A Hetero INTERGENIC
SBS Chr2 21936093 C-T Homo INTERGENIC
SBS Chr3 23666623 C-A Homo INTERGENIC
SBS Chr4 8478480 C-G Hetero INTERGENIC
SBS Chr4 13818697 G-A Hetero INTRON
SBS Chr5 4401878 G-A Hetero INTRON
SBS Chr5 5939105 T-C Hetero INTERGENIC
SBS Chr5 5939106 C-G Hetero INTERGENIC
SBS Chr5 13975397 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g108100
SBS Chr5 13975399 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 14558363 A-T Hetero INTERGENIC
SBS Chr5 24848644 A-T Homo INTERGENIC
SBS Chr5 27602446 T-A Hetero UTR_3_PRIME
SBS Chr6 3088896 A-G Hetero INTERGENIC
SBS Chr6 22028162 G-A Homo INTERGENIC
SBS Chr7 9483634 T-A Hetero INTERGENIC
SBS Chr7 13743500 C-T Hetero INTERGENIC
SBS Chr7 14636107 G-A Hetero INTERGENIC
SBS Chr7 17315793 C-A Hetero INTERGENIC
SBS Chr7 26153753 A-C Hetero INTERGENIC
SBS Chr8 4054880 A-C Homo INTERGENIC
SBS Chr8 11260055 A-G Homo INTERGENIC
SBS Chr8 18580416 A-G Homo INTERGENIC
SBS Chr9 5332531 G-C Hetero INTERGENIC
SBS Chr9 17802764 G-A Hetero INTERGENIC
SBS Chr9 18675357 T-G Hetero INTERGENIC
SBS Chr10 4045192 G-T Hetero INTERGENIC
SBS Chr10 20646483 G-T Hetero INTERGENIC
SBS Chr11 24099159 C-T Hetero INTERGENIC
SBS Chr11 24099167 A-T Hetero INTERGENIC
SBS Chr12 79956 G-A Hetero INTERGENIC
SBS Chr12 18462198 T-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1664078 1664081 3
Deletion Chr9 2500548 2500569 21
Deletion Chr12 4849933 4849945 12
Deletion Chr2 5948198 5948200 2
Deletion Chr1 6457559 6457560 1 OsKitaake01g081500
Deletion Chr1 8011001 8036000 24999 3
Deletion Chr1 8104244 8104246 2
Deletion Chr11 11423001 11456000 32999 2
Deletion Chr7 11701001 11721000 19999 OsKitaake07g108401
Deletion Chr11 12671141 12671142 1
Deletion Chr11 13405999 13406010 11
Deletion Chr12 13583601 13583606 5
Deletion Chr3 22083520 22083522 2
Deletion Chr2 27527277 27527280 3
Deletion Chr3 28439059 28439061 2 OsKitaake03g294400

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 17887083 17887086 2
Insertion Chr8 23846722 23846725 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 11254662 11422940
Inversion Chr11 11254673 11455918

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1627918	T-C	Homo	INTRON
SBS	Chr1	6894215	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g086700
SBS	Chr1	7166576	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	8112344	A-C	Hetero	INTERGENIC
SBS	Chr1	19121466	G-A	Homo	INTRON
SBS	Chr1	41193400	A-T	Hetero	INTERGENIC
SBS	Chr2	1368602	G-T	Homo	INTRON
SBS	Chr2	4835120	G-C	Homo	INTERGENIC
SBS	Chr2	7306510	A-G	Hetero	INTERGENIC
SBS	Chr2	14326208	T-A	Hetero	INTERGENIC
SBS	Chr2	21936093	C-T	Homo	INTERGENIC
SBS	Chr3	23666623	C-A	Homo	INTERGENIC
SBS	Chr4	8478480	C-G	Hetero	INTERGENIC
SBS	Chr4	13818697	G-A	Hetero	INTRON
SBS	Chr5	4401878	G-A	Hetero	INTRON
SBS	Chr5	5939105	T-C	Hetero	INTERGENIC
SBS	Chr5	5939106	C-G	Hetero	INTERGENIC
SBS	Chr5	13975397	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g108100
SBS	Chr5	13975399	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	14558363	A-T	Hetero	INTERGENIC
SBS	Chr5	24848644	A-T	Homo	INTERGENIC
SBS	Chr5	27602446	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	3088896	A-G	Hetero	INTERGENIC
SBS	Chr6	22028162	G-A	Homo	INTERGENIC
SBS	Chr7	9483634	T-A	Hetero	INTERGENIC
SBS	Chr7	13743500	C-T	Hetero	INTERGENIC
SBS	Chr7	14636107	G-A	Hetero	INTERGENIC
SBS	Chr7	17315793	C-A	Hetero	INTERGENIC
SBS	Chr7	26153753	A-C	Hetero	INTERGENIC
SBS	Chr8	4054880	A-C	Homo	INTERGENIC
SBS	Chr8	11260055	A-G	Homo	INTERGENIC
SBS	Chr8	18580416	A-G	Homo	INTERGENIC
SBS	Chr9	5332531	G-C	Hetero	INTERGENIC
SBS	Chr9	17802764	G-A	Hetero	INTERGENIC
SBS	Chr9	18675357	T-G	Hetero	INTERGENIC
SBS	Chr10	4045192	G-T	Hetero	INTERGENIC
SBS	Chr10	20646483	G-T	Hetero	INTERGENIC
SBS	Chr11	24099159	C-T	Hetero	INTERGENIC
SBS	Chr11	24099167	A-T	Hetero	INTERGENIC
SBS	Chr12	79956	G-A	Hetero	INTERGENIC
SBS	Chr12	18462198	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1664078	1664081	3
Deletion	Chr9	2500548	2500569	21
Deletion	Chr12	4849933	4849945	12
Deletion	Chr2	5948198	5948200	2
Deletion	Chr1	6457559	6457560	1	OsKitaake01g081500
Deletion	Chr1	8011001	8036000	24999	3
Deletion	Chr1	8104244	8104246	2
Deletion	Chr11	11423001	11456000	32999	2
Deletion	Chr7	11701001	11721000	19999	OsKitaake07g108401
Deletion	Chr11	12671141	12671142	1
Deletion	Chr11	13405999	13406010	11
Deletion	Chr12	13583601	13583606	5
Deletion	Chr3	22083520	22083522	2
Deletion	Chr2	27527277	27527280	3
Deletion	Chr3	28439059	28439061	2	OsKitaake03g294400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11254662	11422940
Inversion	Chr11	11254673	11455918

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes