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Mutant Information

Mutant Name	FN3386-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3386-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2991837 A-T Hetero INTERGENIC
SBS Chr1 37549371 C-T Hetero INTERGENIC
SBS Chr2 1780002 T-G Homo INTRON
SBS Chr2 29397219 T-G Hetero INTERGENIC
SBS Chr2 33528623 C-G Hetero INTERGENIC
SBS Chr2 33528629 G-T Hetero INTERGENIC
SBS Chr3 19862781 G-T Homo INTERGENIC
SBS Chr4 4691712 A-C Hetero INTERGENIC
SBS Chr4 9099894 C-T Hetero INTERGENIC
SBS Chr5 407851 T-A Hetero INTERGENIC
SBS Chr5 17830466 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g137700
SBS Chr6 11739814 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g128000
SBS Chr6 19873916 G-A Hetero INTERGENIC
SBS Chr7 6508915 G-A Hetero INTERGENIC
SBS Chr7 6508924 G-A Hetero INTERGENIC
SBS Chr7 8629322 A-G Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 15265962 G-A Hetero INTRON
SBS Chr8 25860015 T-A Homo INTERGENIC
SBS Chr9 8279362 A-T Homo INTERGENIC
SBS Chr10 5750296 T-C Hetero INTERGENIC
SBS Chr11 3898277 A-C Hetero INTERGENIC
SBS Chr11 9054863 T-A Hetero INTERGENIC
SBS Chr11 9054864 C-A Hetero INTERGENIC
SBS Chr11 11469476 C-T Hetero INTERGENIC
SBS Chr11 15076123 C-T Hetero START_GAINED
SBS Chr11 22333609 A-G Homo INTERGENIC
SBS Chr11 22992348 T-C Homo INTRON
SBS Chr11 24288149 G-C Hetero INTERGENIC
SBS Chr11 25675071 C-T Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 235035 235037 2
Deletion Chr3 1678001 1690000 11999 OsKitaake03g023750
Deletion Chr11 2522001 2758000 235999 22
Deletion Chr11 2640050 2640052 2
Deletion Chr1 3655001 3665000 9999 OsKitaake01g049000
Deletion Chr6 4187001 4208000 20999 2
Deletion Chr1 6507270 6507272 2
Deletion Chr9 7946234 7946236 2
Deletion Chr2 8685261 8685263 2
Deletion Chr6 8984897 8984903 6
Deletion Chr1 9500520 9500522 2
Deletion Chr12 20502368 20502369 1
Deletion Chr7 21109720 21109722 2
Deletion Chr12 22085252 22085254 2
Deletion Chr3 22799767 22799775 8
Deletion Chr2 22857001 22865000 7999 OsKitaake02g222400
Deletion Chr10 23138001 23163000 24999 OsKitaake10g195250
Deletion Chr12 26720001 26735000 14999 OsKitaake12g222100
Deletion Chr6 27923001 27936000 12999 OsKitaake06g253400
Deletion Chr3 28575001 28691000 115999 10
Deletion Chr3 28711001 28888000 176999 23
Deletion Chr5 29143390 29143392 2
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr4 31390714 31390717 3
Deletion Chr1 42305001 42315000 9999 OsKitaake01g466400

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44244958 44244961 2
Insertion Chr2 9838725 9838728 2
Insertion Chr5 1129767 1129770 2
Insertion Chr5 18420340 18420343 2
Insertion Chr12 22995057 22995064 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4859158 5679736
Inversion Chr7 4859172 5679757

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 25096386 Chr5 15918663 OsKitaake05g122200
Translocation Chr11 25096486 Chr5 15917473 OsKitaake05g122200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2991837	A-T	Hetero	INTERGENIC
SBS	Chr1	37549371	C-T	Hetero	INTERGENIC
SBS	Chr2	1780002	T-G	Homo	INTRON
SBS	Chr2	29397219	T-G	Hetero	INTERGENIC
SBS	Chr2	33528623	C-G	Hetero	INTERGENIC
SBS	Chr2	33528629	G-T	Hetero	INTERGENIC
SBS	Chr3	19862781	G-T	Homo	INTERGENIC
SBS	Chr4	4691712	A-C	Hetero	INTERGENIC
SBS	Chr4	9099894	C-T	Hetero	INTERGENIC
SBS	Chr5	407851	T-A	Hetero	INTERGENIC
SBS	Chr5	17830466	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g137700
SBS	Chr6	11739814	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g128000
SBS	Chr6	19873916	G-A	Hetero	INTERGENIC
SBS	Chr7	6508915	G-A	Hetero	INTERGENIC
SBS	Chr7	6508924	G-A	Hetero	INTERGENIC
SBS	Chr7	8629322	A-G	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	15265962	G-A	Hetero	INTRON
SBS	Chr8	25860015	T-A	Homo	INTERGENIC
SBS	Chr9	8279362	A-T	Homo	INTERGENIC
SBS	Chr10	5750296	T-C	Hetero	INTERGENIC
SBS	Chr11	3898277	A-C	Hetero	INTERGENIC
SBS	Chr11	9054863	T-A	Hetero	INTERGENIC
SBS	Chr11	9054864	C-A	Hetero	INTERGENIC
SBS	Chr11	11469476	C-T	Hetero	INTERGENIC
SBS	Chr11	15076123	C-T	Hetero	START_GAINED
SBS	Chr11	22333609	A-G	Homo	INTERGENIC
SBS	Chr11	22992348	T-C	Homo	INTRON
SBS	Chr11	24288149	G-C	Hetero	INTERGENIC
SBS	Chr11	25675071	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	235035	235037	2
Deletion	Chr3	1678001	1690000	11999	OsKitaake03g023750
Deletion	Chr11	2522001	2758000	235999	22
Deletion	Chr11	2640050	2640052	2
Deletion	Chr1	3655001	3665000	9999	OsKitaake01g049000
Deletion	Chr6	4187001	4208000	20999	2
Deletion	Chr1	6507270	6507272	2
Deletion	Chr9	7946234	7946236	2
Deletion	Chr2	8685261	8685263	2
Deletion	Chr6	8984897	8984903	6
Deletion	Chr1	9500520	9500522	2
Deletion	Chr12	20502368	20502369	1
Deletion	Chr7	21109720	21109722	2
Deletion	Chr12	22085252	22085254	2
Deletion	Chr3	22799767	22799775	8
Deletion	Chr2	22857001	22865000	7999	OsKitaake02g222400
Deletion	Chr10	23138001	23163000	24999	OsKitaake10g195250
Deletion	Chr12	26720001	26735000	14999	OsKitaake12g222100
Deletion	Chr6	27923001	27936000	12999	OsKitaake06g253400
Deletion	Chr3	28575001	28691000	115999	10
Deletion	Chr3	28711001	28888000	176999	23
Deletion	Chr5	29143390	29143392	2
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr4	31390714	31390717	3
Deletion	Chr1	42305001	42315000	9999	OsKitaake01g466400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4859158	5679736
Inversion	Chr7	4859172	5679757

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes