Search Kitaake

Mutant Information

Mutant Name	FN3387-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3387-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 64

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8575894 C-T Hetero INTRON
SBS Chr1 14987265 C-T Hetero INTERGENIC
SBS Chr1 15749459 G-C Hetero INTERGENIC
SBS Chr1 20567175 C-G Hetero INTERGENIC
SBS Chr1 23209014 C-T Hetero INTERGENIC
SBS Chr1 27945045 T-A Hetero INTERGENIC
SBS Chr1 36417534 G-A Hetero INTERGENIC
SBS Chr1 41079284 T-C Hetero INTERGENIC
SBS Chr2 5702290 A-G Hetero INTERGENIC
SBS Chr3 5820704 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g082600
SBS Chr3 10270518 A-T Hetero INTERGENIC
SBS Chr3 10806354 A-G Hetero INTERGENIC
SBS Chr3 16487365 A-T Hetero INTERGENIC
SBS Chr3 19801337 A-C Hetero INTERGENIC
SBS Chr3 21985900 G-A Homo INTERGENIC
SBS Chr3 24313731 C-A Hetero INTERGENIC
SBS Chr3 28545609 C-T Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 7735678 G-A Hetero INTERGENIC
SBS Chr4 25336715 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g172700
SBS Chr4 28360134 C-T Hetero INTERGENIC
SBS Chr4 28428062 A-G Homo INTERGENIC
SBS Chr4 33383518 G-T Homo INTERGENIC
SBS Chr4 35400779 G-T Hetero INTERGENIC
SBS Chr5 5273683 C-T Hetero INTERGENIC
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 19479852 C-G Hetero INTERGENIC
SBS Chr5 23483084 C-T Hetero INTERGENIC
SBS Chr6 6473131 C-A Hetero INTERGENIC
SBS Chr6 10694789 C-T Hetero INTERGENIC
SBS Chr6 12861308 C-T Hetero INTERGENIC
SBS Chr6 20223699 G-A Hetero INTERGENIC
SBS Chr7 969450 T-C Hetero INTERGENIC
SBS Chr7 3475958 C-A Hetero INTRON
SBS Chr7 8476191 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 10074010 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g099300
SBS Chr7 10445996 C-A Hetero INTERGENIC
SBS Chr7 12158364 C-T Hetero INTERGENIC
SBS Chr7 12918663 C-A Hetero INTERGENIC
SBS Chr7 15292919 G-T Hetero INTERGENIC
SBS Chr7 21296971 C-T Hetero INTERGENIC
SBS Chr7 21296973 A-C Hetero INTERGENIC
SBS Chr7 22942438 T-A Hetero INTRON
SBS Chr7 26802485 G-A Homo INTERGENIC
SBS Chr8 3627079 A-G Homo INTERGENIC
SBS Chr8 3672074 C-A Hetero INTERGENIC
SBS Chr8 12877433 C-G Hetero INTERGENIC
SBS Chr8 15809359 C-T Hetero INTERGENIC
SBS Chr9 3907507 C-T Hetero INTERGENIC
SBS Chr9 6451562 G-A Hetero INTERGENIC
SBS Chr9 18867939 T-A Hetero INTERGENIC
SBS Chr10 3983768 C-G Hetero INTERGENIC
SBS Chr10 14232287 G-A Hetero INTERGENIC
SBS Chr11 6790691 A-T Hetero INTERGENIC
SBS Chr11 14912534 C-A Hetero INTERGENIC
SBS Chr11 16307396 G-T Hetero INTERGENIC
SBS Chr11 18533226 C-G Hetero INTERGENIC
SBS Chr11 24469262 T-A Homo INTERGENIC
SBS Chr12 1608512 T-C Hetero INTERGENIC
SBS Chr12 10952313 A-T Homo INTRON
SBS Chr12 12489518 G-A Homo INTERGENIC
SBS Chr12 20181897 A-G Hetero INTERGENIC
SBS Chr12 23409303 A-T Hetero INTERGENIC
SBS Chr12 23472065 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2938746 2938750 4
Deletion Chr12 6512726 6512730 4 OsKitaake12g074900
Deletion Chr11 12859183 12859184 1
Deletion Chr10 14456053 14456058 5
Deletion Chr2 18735080 18735082 2
Deletion Chr11 19353890 19353900 10
Deletion Chr10 19368001 19387000 18999 OsKitaake10g141100
Deletion Chr9 20790479 20790480 1
Deletion Chr6 22398733 22398734 1 OsKitaake06g196700
Deletion Chr11 23122737 23122738 1
Deletion Chr8 23766859 23766861 2
Deletion Chr7 24020116 24020128 12
Deletion Chr1 24276071 24276077 6
Deletion Chr3 24325527 24325529 2
Deletion Chr4 25129132 25129134 2
Deletion Chr7 28170552 28170553 1
Deletion Chr3 33834763 33834765 2 OsKitaake03g364550

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 23170972 23170977 4
Insertion Chr2 24744056 24744059 2
Insertion Chr2 27077297 27077300 2
Insertion Chr4 8896687 8896689 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6926776 7058625 2
Inversion Chr2 6926780 7058637 2
Inversion Chr3 21180452 21716394
Inversion Chr3 21180454 21716401

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1677348 Chr8 2828587
Translocation Chr10 1677669 Chr8 2828611
Translocation Chr12 20751954 Chr11 25253950
Translocation Chr12 20751955 Chr11 25250787

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8575894	C-T	Hetero	INTRON
SBS	Chr1	14987265	C-T	Hetero	INTERGENIC
SBS	Chr1	15749459	G-C	Hetero	INTERGENIC
SBS	Chr1	20567175	C-G	Hetero	INTERGENIC
SBS	Chr1	23209014	C-T	Hetero	INTERGENIC
SBS	Chr1	27945045	T-A	Hetero	INTERGENIC
SBS	Chr1	36417534	G-A	Hetero	INTERGENIC
SBS	Chr1	41079284	T-C	Hetero	INTERGENIC
SBS	Chr2	5702290	A-G	Hetero	INTERGENIC
SBS	Chr3	5820704	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g082600
SBS	Chr3	10270518	A-T	Hetero	INTERGENIC
SBS	Chr3	10806354	A-G	Hetero	INTERGENIC
SBS	Chr3	16487365	A-T	Hetero	INTERGENIC
SBS	Chr3	19801337	A-C	Hetero	INTERGENIC
SBS	Chr3	21985900	G-A	Homo	INTERGENIC
SBS	Chr3	24313731	C-A	Hetero	INTERGENIC
SBS	Chr3	28545609	C-T	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	7735678	G-A	Hetero	INTERGENIC
SBS	Chr4	25336715	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g172700
SBS	Chr4	28360134	C-T	Hetero	INTERGENIC
SBS	Chr4	28428062	A-G	Homo	INTERGENIC
SBS	Chr4	33383518	G-T	Homo	INTERGENIC
SBS	Chr4	35400779	G-T	Hetero	INTERGENIC
SBS	Chr5	5273683	C-T	Hetero	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	19479852	C-G	Hetero	INTERGENIC
SBS	Chr5	23483084	C-T	Hetero	INTERGENIC
SBS	Chr6	6473131	C-A	Hetero	INTERGENIC
SBS	Chr6	10694789	C-T	Hetero	INTERGENIC
SBS	Chr6	12861308	C-T	Hetero	INTERGENIC
SBS	Chr6	20223699	G-A	Hetero	INTERGENIC
SBS	Chr7	969450	T-C	Hetero	INTERGENIC
SBS	Chr7	3475958	C-A	Hetero	INTRON
SBS	Chr7	8476191	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	10074010	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g099300
SBS	Chr7	10445996	C-A	Hetero	INTERGENIC
SBS	Chr7	12158364	C-T	Hetero	INTERGENIC
SBS	Chr7	12918663	C-A	Hetero	INTERGENIC
SBS	Chr7	15292919	G-T	Hetero	INTERGENIC
SBS	Chr7	21296971	C-T	Hetero	INTERGENIC
SBS	Chr7	21296973	A-C	Hetero	INTERGENIC
SBS	Chr7	22942438	T-A	Hetero	INTRON
SBS	Chr7	26802485	G-A	Homo	INTERGENIC
SBS	Chr8	3627079	A-G	Homo	INTERGENIC
SBS	Chr8	3672074	C-A	Hetero	INTERGENIC
SBS	Chr8	12877433	C-G	Hetero	INTERGENIC
SBS	Chr8	15809359	C-T	Hetero	INTERGENIC
SBS	Chr9	3907507	C-T	Hetero	INTERGENIC
SBS	Chr9	6451562	G-A	Hetero	INTERGENIC
SBS	Chr9	18867939	T-A	Hetero	INTERGENIC
SBS	Chr10	3983768	C-G	Hetero	INTERGENIC
SBS	Chr10	14232287	G-A	Hetero	INTERGENIC
SBS	Chr11	6790691	A-T	Hetero	INTERGENIC
SBS	Chr11	14912534	C-A	Hetero	INTERGENIC
SBS	Chr11	16307396	G-T	Hetero	INTERGENIC
SBS	Chr11	18533226	C-G	Hetero	INTERGENIC
SBS	Chr11	24469262	T-A	Homo	INTERGENIC
SBS	Chr12	1608512	T-C	Hetero	INTERGENIC
SBS	Chr12	10952313	A-T	Homo	INTRON
SBS	Chr12	12489518	G-A	Homo	INTERGENIC
SBS	Chr12	20181897	A-G	Hetero	INTERGENIC
SBS	Chr12	23409303	A-T	Hetero	INTERGENIC
SBS	Chr12	23472065	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2938746	2938750	4
Deletion	Chr12	6512726	6512730	4	OsKitaake12g074900
Deletion	Chr11	12859183	12859184	1
Deletion	Chr10	14456053	14456058	5
Deletion	Chr2	18735080	18735082	2
Deletion	Chr11	19353890	19353900	10
Deletion	Chr10	19368001	19387000	18999	OsKitaake10g141100
Deletion	Chr9	20790479	20790480	1
Deletion	Chr6	22398733	22398734	1	OsKitaake06g196700
Deletion	Chr11	23122737	23122738	1
Deletion	Chr8	23766859	23766861	2
Deletion	Chr7	24020116	24020128	12
Deletion	Chr1	24276071	24276077	6
Deletion	Chr3	24325527	24325529	2
Deletion	Chr4	25129132	25129134	2
Deletion	Chr7	28170552	28170553	1
Deletion	Chr3	33834763	33834765	2	OsKitaake03g364550

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6926776	7058625	2
Inversion	Chr2	6926780	7058637	2
Inversion	Chr3	21180452	21716394
Inversion	Chr3	21180454	21716401

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes