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Mutant Information

Mutant Name	FN3388-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3388-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2209073 C-T Hetero INTERGENIC
SBS Chr1 2921781 C-T Hetero INTERGENIC
SBS Chr1 6307290 C-T Hetero INTERGENIC
SBS Chr1 6533582 G-A Hetero INTERGENIC
SBS Chr1 11852213 G-T Hetero INTERGENIC
SBS Chr1 39329676 T-C Hetero INTERGENIC
SBS Chr2 5978136 G-A Hetero INTERGENIC
SBS Chr2 12432381 G-T Hetero INTERGENIC
SBS Chr2 25429194 C-T Homo INTERGENIC
SBS Chr2 26783016 G-A Homo INTERGENIC
SBS Chr2 27014319 C-A Homo INTERGENIC
SBS Chr3 9217664 G-A Homo INTERGENIC
SBS Chr3 9248036 G-C Homo NON_SYNONYMOUS_CODING OsKitaake03g126300
SBS Chr3 15219842 C-T Hetero INTERGENIC
SBS Chr3 24239015 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g258900
SBS Chr3 26982002 T-C Hetero INTERGENIC
SBS Chr4 5441933 G-A Hetero INTERGENIC
SBS Chr4 9325039 C-G Hetero INTERGENIC
SBS Chr4 17539545 G-A Hetero INTERGENIC
SBS Chr4 29713034 T-C Hetero INTERGENIC
SBS Chr4 31365749 G-A Homo INTERGENIC
SBS Chr4 35384026 C-A Hetero INTERGENIC
SBS Chr4 36235895 A-C Hetero INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 2647619 G-A Hetero INTERGENIC
SBS Chr5 5130769 G-T Homo UTR_5_PRIME
SBS Chr5 9219500 C-T Hetero INTERGENIC
SBS Chr5 16783322 A-T Hetero INTERGENIC
SBS Chr5 16783323 C-T Hetero INTERGENIC
SBS Chr5 21132999 C-T Hetero INTERGENIC
SBS Chr5 21595157 T-A Hetero UTR_3_PRIME
SBS Chr5 24703898 C-T Hetero UTR_5_PRIME
SBS Chr5 29502082 T-G Homo NON_SYNONYMOUS_CODING OsKitaake05g280200
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr6 17584578 T-A Hetero INTERGENIC
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr6 29329196 C-T Hetero INTERGENIC
SBS Chr7 3565034 T-C Hetero INTRON
SBS Chr7 15538711 T-C Hetero INTERGENIC
SBS Chr7 22832311 G-A Hetero INTERGENIC
SBS Chr8 7354803 G-T Hetero INTERGENIC
SBS Chr8 7677339 T-A Hetero INTERGENIC
SBS Chr10 701645 G-A Hetero INTRON
SBS Chr10 11051559 A-G Hetero INTERGENIC
SBS Chr10 15129951 C-T Hetero INTERGENIC
SBS Chr11 2736022 T-G Hetero INTERGENIC
SBS Chr11 11861931 C-T Hetero INTERGENIC
SBS Chr11 16735526 G-A Hetero INTERGENIC
SBS Chr12 7730824 C-T Hetero INTERGENIC
SBS Chr12 8950532 G-T Hetero INTERGENIC
SBS Chr12 11459270 T-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 145001 193000 47999 11
Deletion Chr3 710073 710082 9
Deletion Chr12 1708001 1722000 13999 7
Deletion Chr2 2108223 2108224 1
Deletion Chr5 5079551 5079594 43
Deletion Chr6 5150001 5167000 16999 3
Deletion Chr10 5328029 5328030 1
Deletion Chr11 6157330 6157338 8
Deletion Chr12 6330285 6330286 1
Deletion Chr6 7896258 7896260 2
Deletion Chr4 8270682 8270685 3
Deletion Chr4 8413845 8413849 4
Deletion Chr6 9737713 9737716 3
Deletion Chr4 12906667 12906669 2
Deletion Chr2 23777472 23777663 191
Deletion Chr12 26718001 26736000 17999 2
Deletion Chr8 26831890 26831891 1 OsKitaake08g217300
Deletion Chr1 27572050 27572055 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1818714 1818716 1
Insertion Chr4 9890301 9890364 62

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 1707605 1728673 OsKitaake12g026100
Inversion Chr5 25920754 26105952 OsKitaake05g230500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 164422 Chr3 192970 2
Translocation Chr12 1721026 Chr5 152469 OsKitaake12g026000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2209073	C-T	Hetero	INTERGENIC
SBS	Chr1	2921781	C-T	Hetero	INTERGENIC
SBS	Chr1	6307290	C-T	Hetero	INTERGENIC
SBS	Chr1	6533582	G-A	Hetero	INTERGENIC
SBS	Chr1	11852213	G-T	Hetero	INTERGENIC
SBS	Chr1	39329676	T-C	Hetero	INTERGENIC
SBS	Chr2	5978136	G-A	Hetero	INTERGENIC
SBS	Chr2	12432381	G-T	Hetero	INTERGENIC
SBS	Chr2	25429194	C-T	Homo	INTERGENIC
SBS	Chr2	26783016	G-A	Homo	INTERGENIC
SBS	Chr2	27014319	C-A	Homo	INTERGENIC
SBS	Chr3	9217664	G-A	Homo	INTERGENIC
SBS	Chr3	9248036	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g126300
SBS	Chr3	15219842	C-T	Hetero	INTERGENIC
SBS	Chr3	24239015	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g258900
SBS	Chr3	26982002	T-C	Hetero	INTERGENIC
SBS	Chr4	5441933	G-A	Hetero	INTERGENIC
SBS	Chr4	9325039	C-G	Hetero	INTERGENIC
SBS	Chr4	17539545	G-A	Hetero	INTERGENIC
SBS	Chr4	29713034	T-C	Hetero	INTERGENIC
SBS	Chr4	31365749	G-A	Homo	INTERGENIC
SBS	Chr4	35384026	C-A	Hetero	INTERGENIC
SBS	Chr4	36235895	A-C	Hetero	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	2647619	G-A	Hetero	INTERGENIC
SBS	Chr5	5130769	G-T	Homo	UTR_5_PRIME
SBS	Chr5	9219500	C-T	Hetero	INTERGENIC
SBS	Chr5	16783322	A-T	Hetero	INTERGENIC
SBS	Chr5	16783323	C-T	Hetero	INTERGENIC
SBS	Chr5	21132999	C-T	Hetero	INTERGENIC
SBS	Chr5	21595157	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	24703898	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	29502082	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g280200
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr6	17584578	T-A	Hetero	INTERGENIC
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr6	29329196	C-T	Hetero	INTERGENIC
SBS	Chr7	3565034	T-C	Hetero	INTRON
SBS	Chr7	15538711	T-C	Hetero	INTERGENIC
SBS	Chr7	22832311	G-A	Hetero	INTERGENIC
SBS	Chr8	7354803	G-T	Hetero	INTERGENIC
SBS	Chr8	7677339	T-A	Hetero	INTERGENIC
SBS	Chr10	701645	G-A	Hetero	INTRON
SBS	Chr10	11051559	A-G	Hetero	INTERGENIC
SBS	Chr10	15129951	C-T	Hetero	INTERGENIC
SBS	Chr11	2736022	T-G	Hetero	INTERGENIC
SBS	Chr11	11861931	C-T	Hetero	INTERGENIC
SBS	Chr11	16735526	G-A	Hetero	INTERGENIC
SBS	Chr12	7730824	C-T	Hetero	INTERGENIC
SBS	Chr12	8950532	G-T	Hetero	INTERGENIC
SBS	Chr12	11459270	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	145001	193000	47999	11
Deletion	Chr3	710073	710082	9
Deletion	Chr12	1708001	1722000	13999	7
Deletion	Chr2	2108223	2108224	1
Deletion	Chr5	5079551	5079594	43
Deletion	Chr6	5150001	5167000	16999	3
Deletion	Chr10	5328029	5328030	1
Deletion	Chr11	6157330	6157338	8
Deletion	Chr12	6330285	6330286	1
Deletion	Chr6	7896258	7896260	2
Deletion	Chr4	8270682	8270685	3
Deletion	Chr4	8413845	8413849	4
Deletion	Chr6	9737713	9737716	3
Deletion	Chr4	12906667	12906669	2
Deletion	Chr2	23777472	23777663	191
Deletion	Chr12	26718001	26736000	17999	2
Deletion	Chr8	26831890	26831891	1	OsKitaake08g217300
Deletion	Chr1	27572050	27572055	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1707605	1728673	OsKitaake12g026100
Inversion	Chr5	25920754	26105952	OsKitaake05g230500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes