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Mutant Information

Mutant Name	FN3389-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3389-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3179564 T-A Hetero INTERGENIC
SBS Chr1 13824066 C-T Hetero INTERGENIC
SBS Chr1 17495416 G-C Hetero INTERGENIC
SBS Chr1 24913404 G-A Hetero INTERGENIC
SBS Chr1 38120128 G-A Hetero INTERGENIC
SBS Chr1 39489973 C-A Hetero INTERGENIC
SBS Chr1 41354603 G-T Homo INTERGENIC
SBS Chr2 16066852 G-C Hetero INTERGENIC
SBS Chr2 23572403 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g231200
SBS Chr2 23678640 G-T Hetero INTERGENIC
SBS Chr2 24293868 C-T Hetero INTERGENIC
SBS Chr2 30401364 C-T Hetero INTERGENIC
SBS Chr2 35481571 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g372400
SBS Chr3 6891859 G-A Hetero INTERGENIC
SBS Chr3 20734525 G-A Hetero INTRON
SBS Chr3 28641340 T-C Hetero INTRON
SBS Chr3 29940994 G-C Hetero INTERGENIC
SBS Chr4 15768048 C-T Hetero INTERGENIC
SBS Chr4 33186527 C-T Hetero INTERGENIC
SBS Chr4 36682032 T-C Homo INTRON
SBS Chr5 11837606 T-A Hetero INTERGENIC
SBS Chr5 17525500 C-T Hetero INTERGENIC
SBS Chr6 30192414 A-G Hetero INTERGENIC
SBS Chr7 5141295 T-A Homo INTERGENIC
SBS Chr7 17537067 T-C Hetero INTERGENIC
SBS Chr8 13751978 T-C Hetero INTERGENIC
SBS Chr8 23939313 C-T Hetero INTERGENIC
SBS Chr9 2384293 G-A Homo UTR_5_PRIME
SBS Chr9 18330499 C-T Hetero INTERGENIC
SBS Chr10 8341428 G-A Hetero UTR_3_PRIME
SBS Chr10 9868148 T-C Homo INTERGENIC
SBS Chr10 20398739 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 10479016 G-C Homo INTERGENIC
SBS Chr11 11857257 T-C Hetero INTRON
SBS Chr11 12959816 T-C Hetero INTERGENIC
SBS Chr11 21634411 A-G Hetero INTERGENIC
SBS Chr12 9686066 G-A Homo INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 28001 52000 23999
Deletion Chr6 54001 59000 4999
Deletion Chr6 65001 91000 25999 2
Deletion Chr6 106001 117000 10999
Deletion Chr3 624737 624739 2
Deletion Chr5 1687187 1687191 4
Deletion Chr11 1831547 1831570 23 OsKitaake11g025500
Deletion Chr9 2354017 2354020 3
Deletion Chr7 5103274 5103281 7
Deletion Chr7 7406001 7451000 44999 2
Deletion Chr11 8316001 9412000 1095999 67
Deletion Chr7 9625736 9625743 7
Deletion Chr7 12232072 12232074 2
Deletion Chr11 15511640 15511642 2
Deletion Chr7 17230232 17230239 7
Deletion Chr8 19129218 19129223 5
Deletion Chr1 19428716 19428717 1
Deletion Chr11 20257001 20280000 22999 5
Deletion Chr1 20556501 20556502 1
Deletion Chr12 20685322 20685324 2
Deletion Chr4 24087038 24087041 3
Deletion Chr5 27726104 27726119 15
Deletion Chr4 28404088 28404090 2
Deletion Chr3 29377588 29377599 11
Deletion Chr5 30231793 30231794 1
Deletion Chr3 30830468 30830470 2
Deletion Chr4 30971338 30971343 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15986072 15986075 2
Insertion Chr3 32163140 32163143 2
Insertion Chr7 25703853 25703859 5
Insertion Chr9 17885776 17885781 4
Insertion Chr10 8499638 8499641 2
Insertion Chr5 20448834 20448837 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 6744681 7033303
Inversion Chr3 6744697 7033319

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 20283623 Chr7 10991195 2
Translocation Chr11 20284805 Chr7 10991194 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3179564	T-A	Hetero	INTERGENIC
SBS	Chr1	13824066	C-T	Hetero	INTERGENIC
SBS	Chr1	17495416	G-C	Hetero	INTERGENIC
SBS	Chr1	24913404	G-A	Hetero	INTERGENIC
SBS	Chr1	38120128	G-A	Hetero	INTERGENIC
SBS	Chr1	39489973	C-A	Hetero	INTERGENIC
SBS	Chr1	41354603	G-T	Homo	INTERGENIC
SBS	Chr2	16066852	G-C	Hetero	INTERGENIC
SBS	Chr2	23572403	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g231200
SBS	Chr2	23678640	G-T	Hetero	INTERGENIC
SBS	Chr2	24293868	C-T	Hetero	INTERGENIC
SBS	Chr2	30401364	C-T	Hetero	INTERGENIC
SBS	Chr2	35481571	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g372400
SBS	Chr3	6891859	G-A	Hetero	INTERGENIC
SBS	Chr3	20734525	G-A	Hetero	INTRON
SBS	Chr3	28641340	T-C	Hetero	INTRON
SBS	Chr3	29940994	G-C	Hetero	INTERGENIC
SBS	Chr4	15768048	C-T	Hetero	INTERGENIC
SBS	Chr4	33186527	C-T	Hetero	INTERGENIC
SBS	Chr4	36682032	T-C	Homo	INTRON
SBS	Chr5	11837606	T-A	Hetero	INTERGENIC
SBS	Chr5	17525500	C-T	Hetero	INTERGENIC
SBS	Chr6	30192414	A-G	Hetero	INTERGENIC
SBS	Chr7	5141295	T-A	Homo	INTERGENIC
SBS	Chr7	17537067	T-C	Hetero	INTERGENIC
SBS	Chr8	13751978	T-C	Hetero	INTERGENIC
SBS	Chr8	23939313	C-T	Hetero	INTERGENIC
SBS	Chr9	2384293	G-A	Homo	UTR_5_PRIME
SBS	Chr9	18330499	C-T	Hetero	INTERGENIC
SBS	Chr10	8341428	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	9868148	T-C	Homo	INTERGENIC
SBS	Chr10	20398739	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	10479016	G-C	Homo	INTERGENIC
SBS	Chr11	11857257	T-C	Hetero	INTRON
SBS	Chr11	12959816	T-C	Hetero	INTERGENIC
SBS	Chr11	21634411	A-G	Hetero	INTERGENIC
SBS	Chr12	9686066	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	28001	52000	23999
Deletion	Chr6	54001	59000	4999
Deletion	Chr6	65001	91000	25999	2
Deletion	Chr6	106001	117000	10999
Deletion	Chr3	624737	624739	2
Deletion	Chr5	1687187	1687191	4
Deletion	Chr11	1831547	1831570	23	OsKitaake11g025500
Deletion	Chr9	2354017	2354020	3
Deletion	Chr7	5103274	5103281	7
Deletion	Chr7	7406001	7451000	44999	2
Deletion	Chr11	8316001	9412000	1095999	67
Deletion	Chr7	9625736	9625743	7
Deletion	Chr7	12232072	12232074	2
Deletion	Chr11	15511640	15511642	2
Deletion	Chr7	17230232	17230239	7
Deletion	Chr8	19129218	19129223	5
Deletion	Chr1	19428716	19428717	1
Deletion	Chr11	20257001	20280000	22999	5
Deletion	Chr1	20556501	20556502	1
Deletion	Chr12	20685322	20685324	2
Deletion	Chr4	24087038	24087041	3
Deletion	Chr5	27726104	27726119	15
Deletion	Chr4	28404088	28404090	2
Deletion	Chr3	29377588	29377599	11
Deletion	Chr5	30231793	30231794	1
Deletion	Chr3	30830468	30830470	2
Deletion	Chr4	30971338	30971343	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6744681	7033303
Inversion	Chr3	6744697	7033319

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes