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Mutant Information

Mutant Name	FN3391-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3391-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8328263 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g103800
SBS Chr1 15237482 G-A Homo INTRON
SBS Chr1 26045778 G-A Hetero INTERGENIC
SBS Chr1 36005578 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g381400
SBS Chr2 15683105 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g162400
SBS Chr3 5197390 G-A Hetero INTERGENIC
SBS Chr3 12844419 T-C Homo NON_SYNONYMOUS_CODING OsKitaake03g172700
SBS Chr3 32080540 C-T Homo SYNONYMOUS_CODING
SBS Chr3 37099334 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g414600
SBS Chr4 8886874 C-T Hetero INTERGENIC
SBS Chr4 17210455 G-A Hetero INTERGENIC
SBS Chr4 26288629 A-G Hetero INTERGENIC
SBS Chr4 34757422 C-T Hetero INTERGENIC
SBS Chr5 5001068 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 1701216 C-G Hetero INTERGENIC
SBS Chr6 7824073 C-T Hetero INTERGENIC
SBS Chr6 27154380 G-A Hetero INTERGENIC
SBS Chr7 354802 T-A Homo INTERGENIC
SBS Chr7 3594907 A-T Hetero INTERGENIC
SBS Chr7 13252740 A-G Hetero INTERGENIC
SBS Chr7 16386479 G-A Hetero INTERGENIC
SBS Chr8 11588380 A-G Hetero INTERGENIC
SBS Chr8 16760534 T-A Hetero INTERGENIC
SBS Chr8 16760536 T-A Hetero INTERGENIC
SBS Chr8 18828240 C-T Hetero UTR_3_PRIME
SBS Chr8 23735252 A-T Hetero INTERGENIC
SBS Chr10 17229533 G-A Hetero INTERGENIC
SBS Chr10 17894377 G-A Hetero INTERGENIC
SBS Chr11 9994559 G-A Hetero INTERGENIC
SBS Chr11 11492519 G-T Hetero INTERGENIC
SBS Chr12 679840 G-T Homo INTERGENIC
SBS Chr12 711279 G-A Hetero INTRON
SBS Chr12 1546658 A-G Homo INTERGENIC
SBS Chr12 11287218 A-G Hetero INTERGENIC
SBS Chr12 13258482 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3405979 3405988 9 OsKitaake12g048100
Deletion Chr10 8140011 8140013 2
Deletion Chr2 12288766 12288768 2
Deletion Chr3 12890665 12890669 4
Deletion Chr1 13603478 13603483 5
Deletion Chr8 17935001 18292000 356999 28
Deletion Chr4 20356505 20356509 4
Deletion Chr12 20404615 20404621 6
Deletion Chr1 29179166 29179167 1 OsKitaake01g284100
Deletion Chr2 34870889 34870890 1
Deletion Chr3 36806868 36806876 8
Deletion Chr3 37064257 37064267 10

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34732481 34732485 3
Insertion Chr4 1886210 1886213 2
Insertion Chr8 20940406 20940409 2
Insertion Chr10 1175187 1175191 3
Insertion Chr10 11947046 11947049 2
Insertion Chr11 7137989 7137992 2
Insertion Chr12 18660027 18660030 2 OsKitaake12g137400
Insertion Chr12 23659508 23659511 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16761213 16893849

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2127171 Chr1 34928762 OsKitaake10g016400
Translocation Chr10 2127173 Chr1 34927677 OsKitaake10g016400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8328263	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g103800
SBS	Chr1	15237482	G-A	Homo	INTRON
SBS	Chr1	26045778	G-A	Hetero	INTERGENIC
SBS	Chr1	36005578	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g381400
SBS	Chr2	15683105	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g162400
SBS	Chr3	5197390	G-A	Hetero	INTERGENIC
SBS	Chr3	12844419	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g172700
SBS	Chr3	32080540	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	37099334	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g414600
SBS	Chr4	8886874	C-T	Hetero	INTERGENIC
SBS	Chr4	17210455	G-A	Hetero	INTERGENIC
SBS	Chr4	26288629	A-G	Hetero	INTERGENIC
SBS	Chr4	34757422	C-T	Hetero	INTERGENIC
SBS	Chr5	5001068	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	1701216	C-G	Hetero	INTERGENIC
SBS	Chr6	7824073	C-T	Hetero	INTERGENIC
SBS	Chr6	27154380	G-A	Hetero	INTERGENIC
SBS	Chr7	354802	T-A	Homo	INTERGENIC
SBS	Chr7	3594907	A-T	Hetero	INTERGENIC
SBS	Chr7	13252740	A-G	Hetero	INTERGENIC
SBS	Chr7	16386479	G-A	Hetero	INTERGENIC
SBS	Chr8	11588380	A-G	Hetero	INTERGENIC
SBS	Chr8	16760534	T-A	Hetero	INTERGENIC
SBS	Chr8	16760536	T-A	Hetero	INTERGENIC
SBS	Chr8	18828240	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	23735252	A-T	Hetero	INTERGENIC
SBS	Chr10	17229533	G-A	Hetero	INTERGENIC
SBS	Chr10	17894377	G-A	Hetero	INTERGENIC
SBS	Chr11	9994559	G-A	Hetero	INTERGENIC
SBS	Chr11	11492519	G-T	Hetero	INTERGENIC
SBS	Chr12	679840	G-T	Homo	INTERGENIC
SBS	Chr12	711279	G-A	Hetero	INTRON
SBS	Chr12	1546658	A-G	Homo	INTERGENIC
SBS	Chr12	11287218	A-G	Hetero	INTERGENIC
SBS	Chr12	13258482	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3405979	3405988	9	OsKitaake12g048100
Deletion	Chr10	8140011	8140013	2
Deletion	Chr2	12288766	12288768	2
Deletion	Chr3	12890665	12890669	4
Deletion	Chr1	13603478	13603483	5
Deletion	Chr8	17935001	18292000	356999	28
Deletion	Chr4	20356505	20356509	4
Deletion	Chr12	20404615	20404621	6
Deletion	Chr1	29179166	29179167	1	OsKitaake01g284100
Deletion	Chr2	34870889	34870890	1
Deletion	Chr3	36806868	36806876	8
Deletion	Chr3	37064257	37064267	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16761213	16893849

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes