Search Kitaake

Mutant Information

Mutant Name	FN3394-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3394-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21735282 A-T Homo INTRON
SBS Chr1 25924886 C-A Hetero INTERGENIC
SBS Chr1 28886277 G-A Homo INTERGENIC
SBS Chr1 37632724 C-T Hetero INTERGENIC
SBS Chr1 40130864 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g435500
SBS Chr1 41814798 G-T Hetero INTRON
SBS Chr1 42857766 G-C Hetero INTERGENIC
SBS Chr2 12286830 G-A Hetero INTERGENIC
SBS Chr2 22063053 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g214600
SBS Chr2 25764334 C-T Hetero INTERGENIC
SBS Chr2 33155664 G-A Hetero UTR_5_PRIME
SBS Chr3 3626046 A-G Hetero INTERGENIC
SBS Chr3 19682686 C-A Hetero INTERGENIC
SBS Chr3 30151628 G-C Homo INTERGENIC
SBS Chr4 1827201 G-A Homo INTERGENIC
SBS Chr4 7699253 T-G Homo INTERGENIC
SBS Chr4 20618092 G-A Hetero UTR_3_PRIME
SBS Chr4 22049915 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 36072399 A-C Hetero INTRON
SBS Chr5 225642 T-A Hetero INTERGENIC
SBS Chr5 7147082 T-C Hetero INTERGENIC
SBS Chr5 29589397 G-T Hetero INTERGENIC
SBS Chr6 4335194 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g059700
SBS Chr6 14052991 A-C Hetero INTERGENIC
SBS Chr6 14729641 C-T Hetero INTERGENIC
SBS Chr8 858736 T-A Homo INTERGENIC
SBS Chr8 19675247 C-A Hetero INTERGENIC
SBS Chr9 6696851 C-T Homo INTERGENIC
SBS Chr9 10071865 A-T Homo INTERGENIC
SBS Chr9 10071866 C-T Homo INTERGENIC
SBS Chr9 11329014 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g070166
SBS Chr9 20523322 C-T Hetero INTRON
SBS Chr10 5297017 G-A Hetero INTERGENIC
SBS Chr10 5459033 C-T Hetero INTERGENIC
SBS Chr10 7359416 G-A Hetero INTERGENIC
SBS Chr10 15307185 G-A Hetero INTERGENIC
SBS Chr12 19270238 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 434866 434870 4 OsKitaake04g003100
Deletion Chr7 542594 542600 6
Deletion Chr4 2252119 2252120 1
Deletion Chr3 4250664 4250666 2
Deletion Chr9 6669989 6669993 4
Deletion Chr9 8181740 8181742 2
Deletion Chr4 8979205 8979220 15
Deletion Chr6 15555307 15555308 1
Deletion Chr6 19558900 19558905 5
Deletion Chr1 20640102 20640111 9
Deletion Chr12 22175099 22175101 2
Deletion Chr2 26468001 26588000 119999 15

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5588785 5588788 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1142216 1895217
Inversion Chr4 1895211 1954253

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1224341 Chr2 26424841
Translocation Chr7 1226906 Chr2 26591371

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21735282	A-T	Homo	INTRON
SBS	Chr1	25924886	C-A	Hetero	INTERGENIC
SBS	Chr1	28886277	G-A	Homo	INTERGENIC
SBS	Chr1	37632724	C-T	Hetero	INTERGENIC
SBS	Chr1	40130864	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g435500
SBS	Chr1	41814798	G-T	Hetero	INTRON
SBS	Chr1	42857766	G-C	Hetero	INTERGENIC
SBS	Chr2	12286830	G-A	Hetero	INTERGENIC
SBS	Chr2	22063053	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g214600
SBS	Chr2	25764334	C-T	Hetero	INTERGENIC
SBS	Chr2	33155664	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	3626046	A-G	Hetero	INTERGENIC
SBS	Chr3	19682686	C-A	Hetero	INTERGENIC
SBS	Chr3	30151628	G-C	Homo	INTERGENIC
SBS	Chr4	1827201	G-A	Homo	INTERGENIC
SBS	Chr4	7699253	T-G	Homo	INTERGENIC
SBS	Chr4	20618092	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	22049915	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	36072399	A-C	Hetero	INTRON
SBS	Chr5	225642	T-A	Hetero	INTERGENIC
SBS	Chr5	7147082	T-C	Hetero	INTERGENIC
SBS	Chr5	29589397	G-T	Hetero	INTERGENIC
SBS	Chr6	4335194	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g059700
SBS	Chr6	14052991	A-C	Hetero	INTERGENIC
SBS	Chr6	14729641	C-T	Hetero	INTERGENIC
SBS	Chr8	858736	T-A	Homo	INTERGENIC
SBS	Chr8	19675247	C-A	Hetero	INTERGENIC
SBS	Chr9	6696851	C-T	Homo	INTERGENIC
SBS	Chr9	10071865	A-T	Homo	INTERGENIC
SBS	Chr9	10071866	C-T	Homo	INTERGENIC
SBS	Chr9	11329014	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g070166
SBS	Chr9	20523322	C-T	Hetero	INTRON
SBS	Chr10	5297017	G-A	Hetero	INTERGENIC
SBS	Chr10	5459033	C-T	Hetero	INTERGENIC
SBS	Chr10	7359416	G-A	Hetero	INTERGENIC
SBS	Chr10	15307185	G-A	Hetero	INTERGENIC
SBS	Chr12	19270238	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	434866	434870	4	OsKitaake04g003100
Deletion	Chr7	542594	542600	6
Deletion	Chr4	2252119	2252120	1
Deletion	Chr3	4250664	4250666	2
Deletion	Chr9	6669989	6669993	4
Deletion	Chr9	8181740	8181742	2
Deletion	Chr4	8979205	8979220	15
Deletion	Chr6	15555307	15555308	1
Deletion	Chr6	19558900	19558905	5
Deletion	Chr1	20640102	20640111	9
Deletion	Chr12	22175099	22175101	2
Deletion	Chr2	26468001	26588000	119999	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1142216	1895217
Inversion	Chr4	1895211	1954253

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes