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Mutant Information

Mutant Name	FN3395-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3395-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 39410634 C-T Homo INTERGENIC
SBS Chr2 4516596 A-G Homo INTRON
SBS Chr2 5073782 G-T Hetero INTRON
SBS Chr2 7067966 T-C Hetero INTERGENIC
SBS Chr2 19811399 T-A Hetero INTRON
SBS Chr2 20333159 T-G Hetero INTERGENIC
SBS Chr2 21126047 G-A Hetero INTERGENIC
SBS Chr2 25077711 C-A Hetero INTERGENIC
SBS Chr3 3957997 G-A Hetero INTERGENIC
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr4 17202604 A-G Hetero INTERGENIC
SBS Chr4 22128834 C-T Hetero INTERGENIC
SBS Chr4 27615369 C-T Homo INTERGENIC
SBS Chr5 5701281 C-T Homo INTERGENIC
SBS Chr5 5802091 T-G Hetero INTERGENIC
SBS Chr5 8462509 G-A Hetero INTERGENIC
SBS Chr5 11416036 A-G Hetero INTRON
SBS Chr5 26808099 T-A Homo NON_SYNONYMOUS_CODING OsKitaake05g239400
SBS Chr6 4617607 C-T Hetero INTERGENIC
SBS Chr6 14508663 T-G Hetero INTERGENIC
SBS Chr6 26371673 T-A Hetero INTRON
SBS Chr7 23251871 A-T Hetero INTRON
SBS Chr7 25891113 T-C Hetero INTERGENIC
SBS Chr8 5653636 C-T Homo INTERGENIC
SBS Chr8 8193813 T-C Homo INTERGENIC
SBS Chr8 10731873 C-T Homo INTRON
SBS Chr8 28358787 T-A Homo INTERGENIC
SBS Chr9 22127101 T-A Hetero INTERGENIC
SBS Chr9 22390350 A-G Hetero INTERGENIC
SBS Chr10 7457030 A-T Hetero INTERGENIC
SBS Chr10 13296931 G-A Hetero INTERGENIC
SBS Chr10 13827107 G-A Homo INTERGENIC
SBS Chr10 14845555 C-T Homo INTERGENIC
SBS Chr10 17218166 C-T Homo INTRON
SBS Chr10 17545101 G-A Hetero INTERGENIC
SBS Chr10 20963377 C-T Hetero INTERGENIC
SBS Chr11 5947161 G-T Hetero INTERGENIC
SBS Chr11 24807073 T-A Hetero INTERGENIC
SBS Chr12 14482947 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7484 7835 351
Deletion Chr3 2708465 2708469 4
Deletion Chr4 8148289 8148296 7
Deletion Chr3 8355207 8355213 6
Deletion Chr9 9595001 9627000 31999 4
Deletion Chr10 9755160 9755172 12
Deletion Chr12 10329860 10329863 3 OsKitaake12g096900
Deletion Chr12 11954933 11954940 7
Deletion Chr4 17278730 17278741 11
Deletion Chr4 21419551 21419552 1
Deletion Chr7 25858135 25858140 5
Deletion Chr4 26139992 26140014 22 OsKitaake04g184400
Deletion Chr2 26599253 26599258 5
Deletion Chr1 28561152 28561155 3
Deletion Chr2 33716904 33716906 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35509979 35509984 4
Insertion Chr3 19357008 19357011 2
Insertion Chr6 5878477 5878480 2
Insertion Chr10 20128465 20128467 1
Insertion Chr9 8297361 8297363 1 OsKitaake09g046800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 38917194 39410394
Inversion Chr1 38917199 39410395

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 23188850 Chr1 17284243

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39410634	C-T	Homo	INTERGENIC
SBS	Chr2	4516596	A-G	Homo	INTRON
SBS	Chr2	5073782	G-T	Hetero	INTRON
SBS	Chr2	7067966	T-C	Hetero	INTERGENIC
SBS	Chr2	19811399	T-A	Hetero	INTRON
SBS	Chr2	20333159	T-G	Hetero	INTERGENIC
SBS	Chr2	21126047	G-A	Hetero	INTERGENIC
SBS	Chr2	25077711	C-A	Hetero	INTERGENIC
SBS	Chr3	3957997	G-A	Hetero	INTERGENIC
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr4	17202604	A-G	Hetero	INTERGENIC
SBS	Chr4	22128834	C-T	Hetero	INTERGENIC
SBS	Chr4	27615369	C-T	Homo	INTERGENIC
SBS	Chr5	5701281	C-T	Homo	INTERGENIC
SBS	Chr5	5802091	T-G	Hetero	INTERGENIC
SBS	Chr5	8462509	G-A	Hetero	INTERGENIC
SBS	Chr5	11416036	A-G	Hetero	INTRON
SBS	Chr5	26808099	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g239400
SBS	Chr6	4617607	C-T	Hetero	INTERGENIC
SBS	Chr6	14508663	T-G	Hetero	INTERGENIC
SBS	Chr6	26371673	T-A	Hetero	INTRON
SBS	Chr7	23251871	A-T	Hetero	INTRON
SBS	Chr7	25891113	T-C	Hetero	INTERGENIC
SBS	Chr8	5653636	C-T	Homo	INTERGENIC
SBS	Chr8	8193813	T-C	Homo	INTERGENIC
SBS	Chr8	10731873	C-T	Homo	INTRON
SBS	Chr8	28358787	T-A	Homo	INTERGENIC
SBS	Chr9	22127101	T-A	Hetero	INTERGENIC
SBS	Chr9	22390350	A-G	Hetero	INTERGENIC
SBS	Chr10	7457030	A-T	Hetero	INTERGENIC
SBS	Chr10	13296931	G-A	Hetero	INTERGENIC
SBS	Chr10	13827107	G-A	Homo	INTERGENIC
SBS	Chr10	14845555	C-T	Homo	INTERGENIC
SBS	Chr10	17218166	C-T	Homo	INTRON
SBS	Chr10	17545101	G-A	Hetero	INTERGENIC
SBS	Chr10	20963377	C-T	Hetero	INTERGENIC
SBS	Chr11	5947161	G-T	Hetero	INTERGENIC
SBS	Chr11	24807073	T-A	Hetero	INTERGENIC
SBS	Chr12	14482947	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7484	7835	351
Deletion	Chr3	2708465	2708469	4
Deletion	Chr4	8148289	8148296	7
Deletion	Chr3	8355207	8355213	6
Deletion	Chr9	9595001	9627000	31999	4
Deletion	Chr10	9755160	9755172	12
Deletion	Chr12	10329860	10329863	3	OsKitaake12g096900
Deletion	Chr12	11954933	11954940	7
Deletion	Chr4	17278730	17278741	11
Deletion	Chr4	21419551	21419552	1
Deletion	Chr7	25858135	25858140	5
Deletion	Chr4	26139992	26140014	22	OsKitaake04g184400
Deletion	Chr2	26599253	26599258	5
Deletion	Chr1	28561152	28561155	3
Deletion	Chr2	33716904	33716906	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	38917194	39410394
Inversion	Chr1	38917199	39410395

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes