Search Kitaake

Mutant Information

Mutant Name	FN3396-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3396-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9790648 C-G Hetero INTRON
SBS Chr1 11321615 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g138600
SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr1 20561511 C-T Hetero INTERGENIC
SBS Chr1 22676757 A-T Hetero INTERGENIC
SBS Chr1 22676758 G-A Hetero INTERGENIC
SBS Chr1 25678225 G-A Hetero INTRON
SBS Chr1 32689684 A-T Hetero SPLICE_SITE_REGION
SBS Chr1 35060293 T-A Hetero INTERGENIC
SBS Chr1 38022521 T-C Hetero INTRON
SBS Chr2 23539 T-A Homo INTRON
SBS Chr2 978507 A-T Homo INTERGENIC
SBS Chr2 8503126 A-T Homo INTERGENIC
SBS Chr2 13214250 C-G Hetero UTR_3_PRIME
SBS Chr2 26882236 C-A Hetero INTERGENIC
SBS Chr3 3105179 G-T Hetero INTERGENIC
SBS Chr3 16881569 A-T Hetero INTERGENIC
SBS Chr3 16881570 A-T Hetero INTERGENIC
SBS Chr3 27305759 C-G Hetero INTERGENIC
SBS Chr3 27538650 T-A Homo INTERGENIC
SBS Chr3 27538651 G-C Homo INTERGENIC
SBS Chr3 27540925 C-A Homo INTERGENIC
SBS Chr3 29440502 G-T Hetero INTERGENIC
SBS Chr4 2839962 C-T Hetero INTERGENIC
SBS Chr4 18703943 C-T Hetero INTERGENIC
SBS Chr5 2302722 C-T Hetero INTRON
SBS Chr5 17430413 C-T Hetero INTERGENIC
SBS Chr5 18398965 C-T Homo INTERGENIC
SBS Chr6 2387740 G-A Hetero INTERGENIC
SBS Chr6 12375930 T-C Hetero INTERGENIC
SBS Chr6 12375933 G-A Hetero INTERGENIC
SBS Chr6 15651631 C-T Hetero STOP_GAINED OsKitaake06g152800
SBS Chr6 15882918 A-G Hetero INTERGENIC
SBS Chr6 18142400 T-C Hetero INTERGENIC
SBS Chr6 24696265 C-T Hetero INTERGENIC
SBS Chr7 13783284 G-T Hetero INTERGENIC
SBS Chr7 16753227 T-G Hetero INTERGENIC
SBS Chr8 19128595 C-A Homo INTERGENIC
SBS Chr8 21917993 T-A Homo INTERGENIC
SBS Chr9 1266628 A-T Hetero INTRON
SBS Chr9 6095090 A-G Hetero INTERGENIC
SBS Chr9 16539971 G-A Homo INTERGENIC
SBS Chr10 11941876 C-A Hetero INTERGENIC
SBS Chr11 28584 T-C Hetero SPLICE_SITE_REGION
SBS Chr11 4172636 T-A Hetero INTERGENIC
SBS Chr11 7617635 A-G Hetero INTERGENIC
SBS Chr12 24684972 T-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2872816 2872819 3
Deletion Chr4 4471571 4471573 2
Deletion Chr7 6901648 6901649 1
Deletion Chr8 8345195 8345202 7
Deletion Chr2 8418351 8418361 10
Deletion Chr12 14698636 14698637 1
Deletion Chr3 17207163 17207171 8 OsKitaake03g213100
Deletion Chr9 17556301 17556305 4
Deletion Chr9 17605059 17605070 11
Deletion Chr9 17728078 17728094 16
Deletion Chr5 17770287 17770288 1
Deletion Chr7 19366590 19366595 5
Deletion Chr5 21418880 21418894 14
Deletion Chr7 22468814 22468815 1
Deletion Chr2 22692273 22692275 2
Deletion Chr1 23195242 23195244 2
Deletion Chr6 25691980 25691981 1
Deletion Chr3 27304329 27304330 1
Deletion Chr8 27667286 27667305 19
Deletion Chr11 28630763 28630766 3
Deletion Chr4 32165775 32165776 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr3 131220 131234 13
Insertion Chr4 1061702 1061705 2
Insertion Chr6 29466295 29466300 4
Insertion Chr11 22992309 22992312 2
Insertion Chr3 26310606 26310609 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 15223096 15223565
Inversion Chr4 29825774 30734713

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 18948055 Chr3 3673365 OsKitaake03g051901
Translocation Chr4 18948596 Chr3 3673364 OsKitaake03g051901

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9790648	C-G	Hetero	INTRON
SBS	Chr1	11321615	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g138600
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr1	20561511	C-T	Hetero	INTERGENIC
SBS	Chr1	22676757	A-T	Hetero	INTERGENIC
SBS	Chr1	22676758	G-A	Hetero	INTERGENIC
SBS	Chr1	25678225	G-A	Hetero	INTRON
SBS	Chr1	32689684	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	35060293	T-A	Hetero	INTERGENIC
SBS	Chr1	38022521	T-C	Hetero	INTRON
SBS	Chr2	23539	T-A	Homo	INTRON
SBS	Chr2	978507	A-T	Homo	INTERGENIC
SBS	Chr2	8503126	A-T	Homo	INTERGENIC
SBS	Chr2	13214250	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	26882236	C-A	Hetero	INTERGENIC
SBS	Chr3	3105179	G-T	Hetero	INTERGENIC
SBS	Chr3	16881569	A-T	Hetero	INTERGENIC
SBS	Chr3	16881570	A-T	Hetero	INTERGENIC
SBS	Chr3	27305759	C-G	Hetero	INTERGENIC
SBS	Chr3	27538650	T-A	Homo	INTERGENIC
SBS	Chr3	27538651	G-C	Homo	INTERGENIC
SBS	Chr3	27540925	C-A	Homo	INTERGENIC
SBS	Chr3	29440502	G-T	Hetero	INTERGENIC
SBS	Chr4	2839962	C-T	Hetero	INTERGENIC
SBS	Chr4	18703943	C-T	Hetero	INTERGENIC
SBS	Chr5	2302722	C-T	Hetero	INTRON
SBS	Chr5	17430413	C-T	Hetero	INTERGENIC
SBS	Chr5	18398965	C-T	Homo	INTERGENIC
SBS	Chr6	2387740	G-A	Hetero	INTERGENIC
SBS	Chr6	12375930	T-C	Hetero	INTERGENIC
SBS	Chr6	12375933	G-A	Hetero	INTERGENIC
SBS	Chr6	15651631	C-T	Hetero	STOP_GAINED	OsKitaake06g152800
SBS	Chr6	15882918	A-G	Hetero	INTERGENIC
SBS	Chr6	18142400	T-C	Hetero	INTERGENIC
SBS	Chr6	24696265	C-T	Hetero	INTERGENIC
SBS	Chr7	13783284	G-T	Hetero	INTERGENIC
SBS	Chr7	16753227	T-G	Hetero	INTERGENIC
SBS	Chr8	19128595	C-A	Homo	INTERGENIC
SBS	Chr8	21917993	T-A	Homo	INTERGENIC
SBS	Chr9	1266628	A-T	Hetero	INTRON
SBS	Chr9	6095090	A-G	Hetero	INTERGENIC
SBS	Chr9	16539971	G-A	Homo	INTERGENIC
SBS	Chr10	11941876	C-A	Hetero	INTERGENIC
SBS	Chr11	28584	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr11	4172636	T-A	Hetero	INTERGENIC
SBS	Chr11	7617635	A-G	Hetero	INTERGENIC
SBS	Chr12	24684972	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2872816	2872819	3
Deletion	Chr4	4471571	4471573	2
Deletion	Chr7	6901648	6901649	1
Deletion	Chr8	8345195	8345202	7
Deletion	Chr2	8418351	8418361	10
Deletion	Chr12	14698636	14698637	1
Deletion	Chr3	17207163	17207171	8	OsKitaake03g213100
Deletion	Chr9	17556301	17556305	4
Deletion	Chr9	17605059	17605070	11
Deletion	Chr9	17728078	17728094	16
Deletion	Chr5	17770287	17770288	1
Deletion	Chr7	19366590	19366595	5
Deletion	Chr5	21418880	21418894	14
Deletion	Chr7	22468814	22468815	1
Deletion	Chr2	22692273	22692275	2
Deletion	Chr1	23195242	23195244	2
Deletion	Chr6	25691980	25691981	1
Deletion	Chr3	27304329	27304330	1
Deletion	Chr8	27667286	27667305	19
Deletion	Chr11	28630763	28630766	3
Deletion	Chr4	32165775	32165776	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	15223096	15223565
Inversion	Chr4	29825774	30734713

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes