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Mutant Information

Mutant Name	FN3398-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3398-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 15726591 C-T Hetero UTR_3_PRIME
SBS Chr2 20786926 C-T Hetero INTERGENIC
SBS Chr3 23980141 C-T Hetero INTERGENIC
SBS Chr4 156965 G-A Hetero INTERGENIC
SBS Chr4 16100610 A-G Hetero INTERGENIC
SBS Chr4 33168423 A-G Hetero UTR_5_PRIME
SBS Chr5 9712514 C-A Hetero INTERGENIC
SBS Chr5 12628315 A-C Hetero INTERGENIC
SBS Chr5 12628322 G-A Hetero INTERGENIC
SBS Chr5 12770630 T-C Hetero INTERGENIC
SBS Chr5 21271022 G-A Hetero UTR_5_PRIME
SBS Chr5 22495648 T-C Hetero UTR_3_PRIME
SBS Chr5 28270879 C-A Homo SPLICE_SITE_ACCEPTOR OsKitaake05g262600
SBS Chr6 11292076 G-A Hetero INTERGENIC
SBS Chr6 13745714 A-G Hetero UTR_3_PRIME
SBS Chr6 16767551 T-G Hetero INTERGENIC
SBS Chr6 16767552 G-A Hetero INTERGENIC
SBS Chr6 23604012 T-G Homo INTERGENIC
SBS Chr6 24252718 C-T Hetero INTERGENIC
SBS Chr6 27604236 G-A Homo INTERGENIC
SBS Chr6 28047209 A-G Homo INTERGENIC
SBS Chr7 2044155 A-G Hetero INTERGENIC
SBS Chr7 9528223 G-A Hetero INTERGENIC
SBS Chr7 28099016 C-A Homo INTRON
SBS Chr8 10137907 G-A Hetero INTERGENIC
SBS Chr8 12285798 G-A Hetero INTERGENIC
SBS Chr8 21700961 G-A Hetero INTERGENIC
SBS Chr8 23350247 C-T Hetero INTERGENIC
SBS Chr9 13700272 C-T Hetero INTERGENIC
SBS Chr9 20450137 C-T Hetero INTERGENIC
SBS Chr10 5261154 C-A Hetero INTERGENIC
SBS Chr10 12018136 G-A Hetero INTERGENIC
SBS Chr10 18039372 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g127100
SBS Chr11 11959352 T-C Hetero INTERGENIC
SBS Chr11 13716135 G-A Hetero INTERGENIC
SBS Chr11 25563626 C-A Hetero INTERGENIC
SBS Chr11 25693502 A-G Hetero INTERGENIC
SBS Chr12 12743742 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1736333 1736334 1
Deletion Chr2 4376204 4376206 2
Deletion Chr12 4915001 4923000 7999 2
Deletion Chr1 7513350 7513351 1
Deletion Chr9 7676332 7676333 1
Deletion Chr3 9557643 9557661 18
Deletion Chr1 11068486 11068487 1
Deletion Chr9 11910915 11910917 2
Deletion Chr6 12395001 12583000 187999 18
Deletion Chr6 12594001 12642000 47999 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7947462 7947467 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 21581109 21667368 OsKitaake05g175500
Inversion Chr5 21581110 21667443 OsKitaake05g175500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 4894389 Chr6 17649315 OsKitaake07g059900
Translocation Chr12 9431864 Chr6 17651229

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	15726591	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	20786926	C-T	Hetero	INTERGENIC
SBS	Chr3	23980141	C-T	Hetero	INTERGENIC
SBS	Chr4	156965	G-A	Hetero	INTERGENIC
SBS	Chr4	16100610	A-G	Hetero	INTERGENIC
SBS	Chr4	33168423	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	9712514	C-A	Hetero	INTERGENIC
SBS	Chr5	12628315	A-C	Hetero	INTERGENIC
SBS	Chr5	12628322	G-A	Hetero	INTERGENIC
SBS	Chr5	12770630	T-C	Hetero	INTERGENIC
SBS	Chr5	21271022	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	22495648	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	28270879	C-A	Homo	SPLICE_SITE_ACCEPTOR	OsKitaake05g262600
SBS	Chr6	11292076	G-A	Hetero	INTERGENIC
SBS	Chr6	13745714	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	16767551	T-G	Hetero	INTERGENIC
SBS	Chr6	16767552	G-A	Hetero	INTERGENIC
SBS	Chr6	23604012	T-G	Homo	INTERGENIC
SBS	Chr6	24252718	C-T	Hetero	INTERGENIC
SBS	Chr6	27604236	G-A	Homo	INTERGENIC
SBS	Chr6	28047209	A-G	Homo	INTERGENIC
SBS	Chr7	2044155	A-G	Hetero	INTERGENIC
SBS	Chr7	9528223	G-A	Hetero	INTERGENIC
SBS	Chr7	28099016	C-A	Homo	INTRON
SBS	Chr8	10137907	G-A	Hetero	INTERGENIC
SBS	Chr8	12285798	G-A	Hetero	INTERGENIC
SBS	Chr8	21700961	G-A	Hetero	INTERGENIC
SBS	Chr8	23350247	C-T	Hetero	INTERGENIC
SBS	Chr9	13700272	C-T	Hetero	INTERGENIC
SBS	Chr9	20450137	C-T	Hetero	INTERGENIC
SBS	Chr10	5261154	C-A	Hetero	INTERGENIC
SBS	Chr10	12018136	G-A	Hetero	INTERGENIC
SBS	Chr10	18039372	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g127100
SBS	Chr11	11959352	T-C	Hetero	INTERGENIC
SBS	Chr11	13716135	G-A	Hetero	INTERGENIC
SBS	Chr11	25563626	C-A	Hetero	INTERGENIC
SBS	Chr11	25693502	A-G	Hetero	INTERGENIC
SBS	Chr12	12743742	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1736333	1736334	1
Deletion	Chr2	4376204	4376206	2
Deletion	Chr12	4915001	4923000	7999	2
Deletion	Chr1	7513350	7513351	1
Deletion	Chr9	7676332	7676333	1
Deletion	Chr3	9557643	9557661	18
Deletion	Chr1	11068486	11068487	1
Deletion	Chr9	11910915	11910917	2
Deletion	Chr6	12395001	12583000	187999	18
Deletion	Chr6	12594001	12642000	47999	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	21581109	21667368	OsKitaake05g175500
Inversion	Chr5	21581110	21667443	OsKitaake05g175500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes