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Mutant Information

Mutant Name	FN3399-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3399-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18383462 G-T Homo INTERGENIC
SBS Chr1 21192198 G-T Hetero INTERGENIC
SBS Chr2 4427674 G-A Hetero INTERGENIC
SBS Chr2 20732052 C-T Homo INTERGENIC
SBS Chr2 20849396 A-T Homo INTRON
SBS Chr3 6633741 T-A Hetero INTRON
SBS Chr3 7748972 C-T Hetero INTERGENIC
SBS Chr3 9802567 C-A Hetero INTERGENIC
SBS Chr3 30588350 C-A Hetero INTERGENIC
SBS Chr4 11735838 C-T Hetero INTERGENIC
SBS Chr4 14078466 T-C Hetero INTERGENIC
SBS Chr4 27265603 A-G Hetero INTERGENIC
SBS Chr4 32259545 C-G Hetero INTERGENIC
SBS Chr5 10504833 C-G Homo INTERGENIC
SBS Chr5 19447389 C-A Hetero INTERGENIC
SBS Chr7 1584021 T-C Homo INTERGENIC
SBS Chr7 25785870 C-T Homo INTERGENIC
SBS Chr8 28984871 A-C Homo INTERGENIC
SBS Chr9 557944 A-G Hetero INTERGENIC
SBS Chr10 5791515 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g039900
SBS Chr10 14219942 A-G Homo INTERGENIC
SBS Chr11 9977185 C-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 8589499 8589504 5
Deletion Chr2 20388450 20388454 4
Deletion Chr5 20747476 20747493 17
Deletion Chr8 28158163 28158166 3
Deletion Chr3 30148373 30148375 2
Deletion Chr4 36091471 36091476 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37382184 37382188 3
Insertion Chr6 14414635 14414638 2
Insertion Chr12 25488962 25488965 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 6577840 7525797 2
Inversion Chr3 6577852 6630347 OsKitaake03g093800
Inversion Chr3 6611299 6630340
Inversion Chr3 6611311 7525799 OsKitaake03g104600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18383462	G-T	Homo	INTERGENIC
SBS	Chr1	21192198	G-T	Hetero	INTERGENIC
SBS	Chr2	4427674	G-A	Hetero	INTERGENIC
SBS	Chr2	20732052	C-T	Homo	INTERGENIC
SBS	Chr2	20849396	A-T	Homo	INTRON
SBS	Chr3	6633741	T-A	Hetero	INTRON
SBS	Chr3	7748972	C-T	Hetero	INTERGENIC
SBS	Chr3	9802567	C-A	Hetero	INTERGENIC
SBS	Chr3	30588350	C-A	Hetero	INTERGENIC
SBS	Chr4	11735838	C-T	Hetero	INTERGENIC
SBS	Chr4	14078466	T-C	Hetero	INTERGENIC
SBS	Chr4	27265603	A-G	Hetero	INTERGENIC
SBS	Chr4	32259545	C-G	Hetero	INTERGENIC
SBS	Chr5	10504833	C-G	Homo	INTERGENIC
SBS	Chr5	19447389	C-A	Hetero	INTERGENIC
SBS	Chr7	1584021	T-C	Homo	INTERGENIC
SBS	Chr7	25785870	C-T	Homo	INTERGENIC
SBS	Chr8	28984871	A-C	Homo	INTERGENIC
SBS	Chr9	557944	A-G	Hetero	INTERGENIC
SBS	Chr10	5791515	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g039900
SBS	Chr10	14219942	A-G	Homo	INTERGENIC
SBS	Chr11	9977185	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	8589499	8589504	5
Deletion	Chr2	20388450	20388454	4
Deletion	Chr5	20747476	20747493	17
Deletion	Chr8	28158163	28158166	3
Deletion	Chr3	30148373	30148375	2
Deletion	Chr4	36091471	36091476	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6577840	7525797	2
Inversion	Chr3	6577852	6630347	OsKitaake03g093800
Inversion	Chr3	6611299	6630340
Inversion	Chr3	6611311	7525799	OsKitaake03g104600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes