Search Kitaake

Mutant Information

Mutant Name	FN3400-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3400-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4863664 C-T Hetero UTR_5_PRIME
SBS Chr1 21569373 T-C Hetero INTERGENIC
SBS Chr1 29378704 T-C Hetero UTR_3_PRIME
SBS Chr1 30627101 G-A Hetero INTERGENIC
SBS Chr2 18386822 C-T Hetero INTERGENIC
SBS Chr2 25681172 A-T Homo INTRON
SBS Chr2 29997897 T-A Hetero INTERGENIC
SBS Chr2 34167348 C-G Homo INTRON
SBS Chr3 495748 C-T Homo INTRON
SBS Chr3 2990543 G-A Homo INTERGENIC
SBS Chr3 7668220 C-T Homo INTERGENIC
SBS Chr3 20014126 T-C Hetero INTERGENIC
SBS Chr3 26255442 C-T Homo INTERGENIC
SBS Chr3 26255444 T-G Homo INTERGENIC
SBS Chr3 31158416 C-A Hetero INTRON
SBS Chr4 7935790 T-G Hetero INTERGENIC
SBS Chr4 11408841 T-C Hetero INTERGENIC
SBS Chr4 11878250 A-T Hetero INTERGENIC
SBS Chr4 12896405 A-G Hetero INTERGENIC
SBS Chr4 14010607 T-G Hetero INTERGENIC
SBS Chr5 4018917 C-T Hetero INTERGENIC
SBS Chr5 14181453 C-A Homo INTERGENIC
SBS Chr5 18249985 T-A Hetero INTERGENIC
SBS Chr5 29193514 G-T Hetero INTRON
SBS Chr5 29193515 G-T Hetero INTRON
SBS Chr7 15531 G-T Hetero INTERGENIC
SBS Chr7 10662504 T-A Hetero INTERGENIC
SBS Chr7 19150629 T-G Hetero INTERGENIC
SBS Chr8 12967976 T-A Homo INTERGENIC
SBS Chr9 5789938 C-T Hetero INTERGENIC
SBS Chr9 8015277 C-T Homo INTERGENIC
SBS Chr9 11972954 C-T Hetero INTERGENIC
SBS Chr10 8358547 C-A Hetero INTERGENIC
SBS Chr12 12274317 C-T Hetero INTERGENIC
SBS Chr12 13331946 C-T Hetero UTR_5_PRIME
SBS Chr12 16974698 A-G Hetero INTERGENIC
SBS Chr12 25626005 C-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 119935 119938 3
Deletion Chr3 9342174 9342176 2
Deletion Chr11 10227903 10227921 18
Deletion Chr8 12954160 12954165 5
Deletion Chr4 12972701 12972703 2
Deletion Chr2 14726748 14726751 3
Deletion Chr5 15013895 15013897 2
Deletion Chr11 16709257 16709259 2
Deletion Chr1 17094287 17094288 1
Deletion Chr4 21760321 21760323 2
Deletion Chr1 40244768 40244774 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 25853971 25853973 1
Insertion Chr10 3785395 3785398 2
Insertion Chr7 11991294 11991296 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4863664	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	21569373	T-C	Hetero	INTERGENIC
SBS	Chr1	29378704	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	30627101	G-A	Hetero	INTERGENIC
SBS	Chr2	18386822	C-T	Hetero	INTERGENIC
SBS	Chr2	25681172	A-T	Homo	INTRON
SBS	Chr2	29997897	T-A	Hetero	INTERGENIC
SBS	Chr2	34167348	C-G	Homo	INTRON
SBS	Chr3	495748	C-T	Homo	INTRON
SBS	Chr3	2990543	G-A	Homo	INTERGENIC
SBS	Chr3	7668220	C-T	Homo	INTERGENIC
SBS	Chr3	20014126	T-C	Hetero	INTERGENIC
SBS	Chr3	26255442	C-T	Homo	INTERGENIC
SBS	Chr3	26255444	T-G	Homo	INTERGENIC
SBS	Chr3	31158416	C-A	Hetero	INTRON
SBS	Chr4	7935790	T-G	Hetero	INTERGENIC
SBS	Chr4	11408841	T-C	Hetero	INTERGENIC
SBS	Chr4	11878250	A-T	Hetero	INTERGENIC
SBS	Chr4	12896405	A-G	Hetero	INTERGENIC
SBS	Chr4	14010607	T-G	Hetero	INTERGENIC
SBS	Chr5	4018917	C-T	Hetero	INTERGENIC
SBS	Chr5	14181453	C-A	Homo	INTERGENIC
SBS	Chr5	18249985	T-A	Hetero	INTERGENIC
SBS	Chr5	29193514	G-T	Hetero	INTRON
SBS	Chr5	29193515	G-T	Hetero	INTRON
SBS	Chr7	15531	G-T	Hetero	INTERGENIC
SBS	Chr7	10662504	T-A	Hetero	INTERGENIC
SBS	Chr7	19150629	T-G	Hetero	INTERGENIC
SBS	Chr8	12967976	T-A	Homo	INTERGENIC
SBS	Chr9	5789938	C-T	Hetero	INTERGENIC
SBS	Chr9	8015277	C-T	Homo	INTERGENIC
SBS	Chr9	11972954	C-T	Hetero	INTERGENIC
SBS	Chr10	8358547	C-A	Hetero	INTERGENIC
SBS	Chr12	12274317	C-T	Hetero	INTERGENIC
SBS	Chr12	13331946	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	16974698	A-G	Hetero	INTERGENIC
SBS	Chr12	25626005	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	119935	119938	3
Deletion	Chr3	9342174	9342176	2
Deletion	Chr11	10227903	10227921	18
Deletion	Chr8	12954160	12954165	5
Deletion	Chr4	12972701	12972703	2
Deletion	Chr2	14726748	14726751	3
Deletion	Chr5	15013895	15013897	2
Deletion	Chr11	16709257	16709259	2
Deletion	Chr1	17094287	17094288	1
Deletion	Chr4	21760321	21760323	2
Deletion	Chr1	40244768	40244774	6

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes