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Mutant Information

Mutant Name	FN3401-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3401-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24098831 T-C Hetero INTERGENIC
SBS Chr1 25663668 T-G Homo INTERGENIC
SBS Chr1 34554022 T-C Hetero INTERGENIC
SBS Chr2 14693172 G-A Hetero INTERGENIC
SBS Chr2 19710420 T-C Hetero INTERGENIC
SBS Chr2 22984594 T-C Hetero UTR_3_PRIME
SBS Chr2 23112385 C-T Hetero INTERGENIC
SBS Chr3 8553961 G-A Hetero INTERGENIC
SBS Chr3 32321140 T-C Hetero INTERGENIC
SBS Chr4 1616441 A-C Hetero INTRON
SBS Chr4 10138361 C-T Hetero INTERGENIC
SBS Chr4 11582322 G-A Hetero INTERGENIC
SBS Chr4 16733884 G-T Hetero INTRON
SBS Chr4 22929978 G-A Homo INTERGENIC
SBS Chr4 24915130 G-A Homo INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr5 9446863 T-A Hetero INTERGENIC
SBS Chr5 21085579 G-A Hetero INTERGENIC
SBS Chr5 22450428 C-A Homo INTERGENIC
SBS Chr5 25812525 T-C Homo INTERGENIC
SBS Chr5 27180743 A-T Homo INTERGENIC
SBS Chr6 7628184 C-T Hetero INTERGENIC
SBS Chr6 19335133 C-T Hetero INTERGENIC
SBS Chr6 22673794 A-T Hetero INTERGENIC
SBS Chr6 27088118 A-G Hetero INTERGENIC
SBS Chr7 866212 A-C Hetero INTERGENIC
SBS Chr7 6326436 G-A Hetero INTERGENIC
SBS Chr7 9148930 A-G Hetero INTERGENIC
SBS Chr7 13935365 C-T Hetero INTERGENIC
SBS Chr7 23480358 C-G Hetero INTERGENIC
SBS Chr7 25150000 G-A Hetero INTERGENIC
SBS Chr7 28399444 C-T Hetero INTERGENIC
SBS Chr8 770777 T-C Hetero UTR_5_PRIME
SBS Chr8 5551333 G-A Hetero INTERGENIC
SBS Chr8 8583570 G-T Hetero INTERGENIC
SBS Chr8 22713596 A-G Hetero INTERGENIC
SBS Chr9 300499 T-C Hetero INTERGENIC
SBS Chr9 2331773 T-C Hetero INTERGENIC
SBS Chr10 9617725 A-G Hetero INTERGENIC
SBS Chr10 11733238 T-C Hetero INTERGENIC
SBS Chr11 1559362 T-C Hetero START_GAINED
SBS Chr11 22763375 C-T Hetero INTERGENIC
SBS Chr11 24772165 A-G Hetero INTERGENIC
SBS Chr12 1575612 C-G Hetero INTERGENIC
SBS Chr12 12856337 T-C Hetero INTERGENIC
SBS Chr12 13646759 G-A Hetero INTERGENIC
SBS Chr12 19878516 T-A Homo INTERGENIC
SBS Chr12 20952045 G-A Homo INTERGENIC
SBS Chr12 24522835 A-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4351078 4351081 3
Deletion Chr3 4980422 4980427 5
Deletion Chr4 5109576 5109582 6
Deletion Chr11 6308646 6308654 8
Deletion Chr6 8539001 8580000 40999 2
Deletion Chr5 9434263 9434269 6
Deletion Chr6 11450288 11450297 9
Deletion Chr11 12472477 12472529 52
Deletion Chr2 14642921 14642926 5
Deletion Chr4 19433001 19447000 13999 OsKitaake04g099601
Deletion Chr9 19676930 19676941 11 OsKitaake09g161300
Deletion Chr8 21643356 21643357 1
Deletion Chr4 22608020 22608028 8
Deletion Chr6 22803456 22803463 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 7091941 7091944 2
Insertion Chr9 8297361 8297363 1 OsKitaake09g046800
Insertion Chr10 5594179 5594182 2
Insertion Chr11 5345278 5345280 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24098831	T-C	Hetero	INTERGENIC
SBS	Chr1	25663668	T-G	Homo	INTERGENIC
SBS	Chr1	34554022	T-C	Hetero	INTERGENIC
SBS	Chr2	14693172	G-A	Hetero	INTERGENIC
SBS	Chr2	19710420	T-C	Hetero	INTERGENIC
SBS	Chr2	22984594	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	23112385	C-T	Hetero	INTERGENIC
SBS	Chr3	8553961	G-A	Hetero	INTERGENIC
SBS	Chr3	32321140	T-C	Hetero	INTERGENIC
SBS	Chr4	1616441	A-C	Hetero	INTRON
SBS	Chr4	10138361	C-T	Hetero	INTERGENIC
SBS	Chr4	11582322	G-A	Hetero	INTERGENIC
SBS	Chr4	16733884	G-T	Hetero	INTRON
SBS	Chr4	22929978	G-A	Homo	INTERGENIC
SBS	Chr4	24915130	G-A	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr5	9446863	T-A	Hetero	INTERGENIC
SBS	Chr5	21085579	G-A	Hetero	INTERGENIC
SBS	Chr5	22450428	C-A	Homo	INTERGENIC
SBS	Chr5	25812525	T-C	Homo	INTERGENIC
SBS	Chr5	27180743	A-T	Homo	INTERGENIC
SBS	Chr6	7628184	C-T	Hetero	INTERGENIC
SBS	Chr6	19335133	C-T	Hetero	INTERGENIC
SBS	Chr6	22673794	A-T	Hetero	INTERGENIC
SBS	Chr6	27088118	A-G	Hetero	INTERGENIC
SBS	Chr7	866212	A-C	Hetero	INTERGENIC
SBS	Chr7	6326436	G-A	Hetero	INTERGENIC
SBS	Chr7	9148930	A-G	Hetero	INTERGENIC
SBS	Chr7	13935365	C-T	Hetero	INTERGENIC
SBS	Chr7	23480358	C-G	Hetero	INTERGENIC
SBS	Chr7	25150000	G-A	Hetero	INTERGENIC
SBS	Chr7	28399444	C-T	Hetero	INTERGENIC
SBS	Chr8	770777	T-C	Hetero	UTR_5_PRIME
SBS	Chr8	5551333	G-A	Hetero	INTERGENIC
SBS	Chr8	8583570	G-T	Hetero	INTERGENIC
SBS	Chr8	22713596	A-G	Hetero	INTERGENIC
SBS	Chr9	300499	T-C	Hetero	INTERGENIC
SBS	Chr9	2331773	T-C	Hetero	INTERGENIC
SBS	Chr10	9617725	A-G	Hetero	INTERGENIC
SBS	Chr10	11733238	T-C	Hetero	INTERGENIC
SBS	Chr11	1559362	T-C	Hetero	START_GAINED
SBS	Chr11	22763375	C-T	Hetero	INTERGENIC
SBS	Chr11	24772165	A-G	Hetero	INTERGENIC
SBS	Chr12	1575612	C-G	Hetero	INTERGENIC
SBS	Chr12	12856337	T-C	Hetero	INTERGENIC
SBS	Chr12	13646759	G-A	Hetero	INTERGENIC
SBS	Chr12	19878516	T-A	Homo	INTERGENIC
SBS	Chr12	20952045	G-A	Homo	INTERGENIC
SBS	Chr12	24522835	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4351078	4351081	3
Deletion	Chr3	4980422	4980427	5
Deletion	Chr4	5109576	5109582	6
Deletion	Chr11	6308646	6308654	8
Deletion	Chr6	8539001	8580000	40999	2
Deletion	Chr5	9434263	9434269	6
Deletion	Chr6	11450288	11450297	9
Deletion	Chr11	12472477	12472529	52
Deletion	Chr2	14642921	14642926	5
Deletion	Chr4	19433001	19447000	13999	OsKitaake04g099601
Deletion	Chr9	19676930	19676941	11	OsKitaake09g161300
Deletion	Chr8	21643356	21643357	1
Deletion	Chr4	22608020	22608028	8
Deletion	Chr6	22803456	22803463	7

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes