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Mutant Information

Mutant Name	FN3404-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3404-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2801347 C-T Hetero INTERGENIC
SBS Chr1 19964257 T-G Hetero INTERGENIC
SBS Chr1 34129208 T-A Hetero INTERGENIC
SBS Chr2 10096570 A-T Hetero INTERGENIC
SBS Chr2 12434004 C-T Homo INTERGENIC
SBS Chr2 35122785 T-C Homo INTRON
SBS Chr3 16949778 A-T Homo INTERGENIC
SBS Chr3 20553307 G-A Hetero INTERGENIC
SBS Chr4 9001915 G-T Hetero INTRON
SBS Chr4 9001916 A-T Hetero INTRON
SBS Chr4 28937220 A-T Hetero INTERGENIC
SBS Chr4 34737884 C-T Homo INTERGENIC
SBS Chr5 9588923 A-C Homo INTERGENIC
SBS Chr5 12561735 G-T Homo INTERGENIC
SBS Chr5 12561895 C-T Homo INTERGENIC
SBS Chr5 16045799 G-A Homo INTERGENIC
SBS Chr6 12072482 C-T Hetero INTERGENIC
SBS Chr7 13654970 T-G Hetero INTERGENIC
SBS Chr9 495499 G-C Hetero INTERGENIC
SBS Chr9 20241544 C-T Homo INTERGENIC
SBS Chr11 12633629 G-T Hetero INTERGENIC
SBS Chr12 24209409 T-C Hetero INTERGENIC
SBS Chr12 24309390 G-A Hetero INTERGENIC
SBS Chr12 25217347 T-A Hetero INTRON
SBS Chr12 25922576 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g214300

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2045444 2045445 1
Deletion Chr3 10901742 10901744 2
Deletion Chr3 22461585 22461756 171
Deletion Chr3 25975613 25975618 5
Deletion Chr6 30104428 30104436 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 23337000 23337003 2
Insertion Chr11 12530004 12530006 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3281153 Chr3 26403427 OsKitaake11g045600
Translocation Chr11 3281166 Chr3 26401159 OsKitaake11g045600
Translocation Chr11 20655802 Chr10 17472194 2
Translocation Chr11 20658407 Chr10 17471543 2
Translocation Chr9 20991161 Chr1 43931278 OsKitaake01g489800
Translocation Chr9 20991163 Chr1 43938291 OsKitaake01g490000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2801347	C-T	Hetero	INTERGENIC
SBS	Chr1	19964257	T-G	Hetero	INTERGENIC
SBS	Chr1	34129208	T-A	Hetero	INTERGENIC
SBS	Chr2	10096570	A-T	Hetero	INTERGENIC
SBS	Chr2	12434004	C-T	Homo	INTERGENIC
SBS	Chr2	35122785	T-C	Homo	INTRON
SBS	Chr3	16949778	A-T	Homo	INTERGENIC
SBS	Chr3	20553307	G-A	Hetero	INTERGENIC
SBS	Chr4	9001915	G-T	Hetero	INTRON
SBS	Chr4	9001916	A-T	Hetero	INTRON
SBS	Chr4	28937220	A-T	Hetero	INTERGENIC
SBS	Chr4	34737884	C-T	Homo	INTERGENIC
SBS	Chr5	9588923	A-C	Homo	INTERGENIC
SBS	Chr5	12561735	G-T	Homo	INTERGENIC
SBS	Chr5	12561895	C-T	Homo	INTERGENIC
SBS	Chr5	16045799	G-A	Homo	INTERGENIC
SBS	Chr6	12072482	C-T	Hetero	INTERGENIC
SBS	Chr7	13654970	T-G	Hetero	INTERGENIC
SBS	Chr9	495499	G-C	Hetero	INTERGENIC
SBS	Chr9	20241544	C-T	Homo	INTERGENIC
SBS	Chr11	12633629	G-T	Hetero	INTERGENIC
SBS	Chr12	24209409	T-C	Hetero	INTERGENIC
SBS	Chr12	24309390	G-A	Hetero	INTERGENIC
SBS	Chr12	25217347	T-A	Hetero	INTRON
SBS	Chr12	25922576	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g214300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2045444	2045445	1
Deletion	Chr3	10901742	10901744	2
Deletion	Chr3	22461585	22461756	171
Deletion	Chr3	25975613	25975618	5
Deletion	Chr6	30104428	30104436	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3281153	Chr3	26403427	OsKitaake11g045600
Translocation	Chr11	3281166	Chr3	26401159	OsKitaake11g045600
Translocation	Chr11	20655802	Chr10	17472194	2
Translocation	Chr11	20658407	Chr10	17471543	2
Translocation	Chr9	20991161	Chr1	43931278	OsKitaake01g489800
Translocation	Chr9	20991163	Chr1	43938291	OsKitaake01g490000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes