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Mutant Information

Mutant Name	FN3407-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3407-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 2494204 G-A Homo INTERGENIC
SBS Chr2 4439722 G-A Hetero INTERGENIC
SBS Chr2 8402436 C-A Homo INTERGENIC
SBS Chr2 11626995 T-A Homo INTERGENIC
SBS Chr2 16938884 C-A Homo INTERGENIC
SBS Chr2 21504673 A-G Homo INTRON
SBS Chr3 4019635 C-T Hetero INTERGENIC
SBS Chr3 13512440 G-A Homo INTERGENIC
SBS Chr4 2372588 G-A Homo INTERGENIC
SBS Chr4 10337837 G-A Hetero INTERGENIC
SBS Chr5 7930886 T-G Homo INTERGENIC
SBS Chr6 26610941 T-C Hetero INTERGENIC
SBS Chr8 976207 G-A Hetero INTERGENIC
SBS Chr8 3257100 G-T Homo INTERGENIC
SBS Chr8 11725772 A-G Hetero INTERGENIC
SBS Chr8 13896085 T-G Hetero INTERGENIC
SBS Chr8 14607995 T-A Hetero INTRON
SBS Chr8 20518254 C-A Homo INTERGENIC
SBS Chr8 20518259 G-A Homo INTERGENIC
SBS Chr8 21463028 G-A Hetero INTERGENIC
SBS Chr8 27114409 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g221400
SBS Chr8 27354298 C-A Hetero INTERGENIC
SBS Chr9 565599 G-A Homo INTERGENIC
SBS Chr10 10094169 C-G Hetero INTERGENIC
SBS Chr10 23132200 G-A Hetero INTERGENIC
SBS Chr11 6287136 A-T Hetero INTERGENIC
SBS Chr11 6450109 C-A Hetero INTERGENIC
SBS Chr11 11577120 C-T Hetero INTRON
SBS Chr11 12330703 C-T Hetero INTERGENIC
SBS Chr11 19136303 C-T Homo INTERGENIC
SBS Chr11 20164844 G-A Homo SYNONYMOUS_CODING
SBS Chr11 25782375 G-A Homo INTERGENIC
SBS Chr12 951132 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g013900
SBS Chr12 2876482 T-A Hetero INTERGENIC
SBS Chr12 17095160 C-T Hetero INTERGENIC
SBS Chr12 18453733 T-A Hetero INTERGENIC
SBS Chr12 20967718 C-A Hetero INTERGENIC
SBS Chr12 20967719 C-T Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2781413 2781418 5
Deletion Chr11 12487231 12487240 9
Deletion Chr12 23565179 23565181 2
Deletion Chr11 28899527 28899536 9
Deletion Chr4 29805149 29805156 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21530175 21530178 2
Insertion Chr11 18582349 18582354 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	2494204	G-A	Homo	INTERGENIC
SBS	Chr2	4439722	G-A	Hetero	INTERGENIC
SBS	Chr2	8402436	C-A	Homo	INTERGENIC
SBS	Chr2	11626995	T-A	Homo	INTERGENIC
SBS	Chr2	16938884	C-A	Homo	INTERGENIC
SBS	Chr2	21504673	A-G	Homo	INTRON
SBS	Chr3	4019635	C-T	Hetero	INTERGENIC
SBS	Chr3	13512440	G-A	Homo	INTERGENIC
SBS	Chr4	2372588	G-A	Homo	INTERGENIC
SBS	Chr4	10337837	G-A	Hetero	INTERGENIC
SBS	Chr5	7930886	T-G	Homo	INTERGENIC
SBS	Chr6	26610941	T-C	Hetero	INTERGENIC
SBS	Chr8	976207	G-A	Hetero	INTERGENIC
SBS	Chr8	3257100	G-T	Homo	INTERGENIC
SBS	Chr8	11725772	A-G	Hetero	INTERGENIC
SBS	Chr8	13896085	T-G	Hetero	INTERGENIC
SBS	Chr8	14607995	T-A	Hetero	INTRON
SBS	Chr8	20518254	C-A	Homo	INTERGENIC
SBS	Chr8	20518259	G-A	Homo	INTERGENIC
SBS	Chr8	21463028	G-A	Hetero	INTERGENIC
SBS	Chr8	27114409	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g221400
SBS	Chr8	27354298	C-A	Hetero	INTERGENIC
SBS	Chr9	565599	G-A	Homo	INTERGENIC
SBS	Chr10	10094169	C-G	Hetero	INTERGENIC
SBS	Chr10	23132200	G-A	Hetero	INTERGENIC
SBS	Chr11	6287136	A-T	Hetero	INTERGENIC
SBS	Chr11	6450109	C-A	Hetero	INTERGENIC
SBS	Chr11	11577120	C-T	Hetero	INTRON
SBS	Chr11	12330703	C-T	Hetero	INTERGENIC
SBS	Chr11	19136303	C-T	Homo	INTERGENIC
SBS	Chr11	20164844	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	25782375	G-A	Homo	INTERGENIC
SBS	Chr12	951132	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g013900
SBS	Chr12	2876482	T-A	Hetero	INTERGENIC
SBS	Chr12	17095160	C-T	Hetero	INTERGENIC
SBS	Chr12	18453733	T-A	Hetero	INTERGENIC
SBS	Chr12	20967718	C-A	Hetero	INTERGENIC
SBS	Chr12	20967719	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2781413	2781418	5
Deletion	Chr11	12487231	12487240	9
Deletion	Chr12	23565179	23565181	2
Deletion	Chr11	28899527	28899536	9
Deletion	Chr4	29805149	29805156	7

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes